myRT

myRT report for GCA_001259255.1_12830_1_40

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Seq: CWXB01000214.1 Shigella sonnei genome assembly 12830_1#40, scaffold ERS428544SCcontig000214, whole genome shotgun sequence (5613 bp)
Overview 1 RT 1: 564-3785 bp Neighborhood of RT #1 [564, 3805] RVT-GII RVT-GII GIIM COG3547 sopB_N ParB Feature: gene Location: 564-1253 bp Ori: CSK51548.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 765-1227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 765-1 227 bp Feature: gene Location: 1268-1795 bp Ori: CSK51570.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1274-1418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 274-1 41 8 bp Feature: domain Description: GIIM Note: maturase Location: 1496-1718 bp Feature: domain Description: GIIM Note: maturase Location: 1 496-1 71 8 bp Feature: gene Location: 2084-2569 bp Ori: CSK51588.1 Feature: domain Description: COG3547 Location: 2102-2534 bp Feature: domain Description: COG3547 Location: 21 02-2534 bp Feature: gene Location: 2825-3805 bp Ori: CSK51613.1 Gene: sopB_2 Feature: domain Description: sopB_N Location: 3002-3197 bp Feature: domain Description: sopB_N Location: 3002-31 97 bp Feature: domain Description: ParB Location: 3410-3785 bp Feature: domain Description: ParB Location: 341 0-3785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), sopB_N (cd16394), ParB (smart00470)

Seq: CWXB01000287.1 Shigella sonnei genome assembly 12830_1#40, scaffold ERS428544SCcontig000287, whole genome shotgun sequence (3202 bp)
Overview 1 RT 1: 1367-2541 bp Neighborhood of RT #1 [1367, 2541] RVT-GII DDE_Tnp_1 Feature: gene Location: 1367-1570 bp Ori: CSK63866.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1475-1565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1475-1565 bp Feature: gene Location: 1896-2378 bp Ori: CSK63886.1 Feature: domain Description: DDE_Tnp_1 Location: 2067-2310 bp Feature: domain Description: DDE_Tnp_1 Location: 2 067-2 310 bp Feature: gene Location: 2401-2541 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: CWXB01000220.1 Shigella sonnei genome assembly 12830_1#40, scaffold ERS428544SCcontig000220, whole genome shotgun sequence (5149 bp)
Overview 1 RT 1: 267-4311 bp Neighborhood of RT #1 [267, 4313] RVT-GII ushA Feature: gene Location: 267-1361 bp Ori: CSK52782.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 534-1191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53 4-1191 bp Feature: gene Location: 2540-2725 bp Feature: gene Location: 2694-4313 bp Ori: CSK52830.1 Gene: ushA_2 Feature: domain Description: ushA Location: 2709-4311 bp Feature: domain Description: ushA Location: 2709-43 11 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, ushA (PRK09558)