myRT

myRT report for GCA_001259355.1_6350_1_12

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Seq: CXFI01000209.1 Shigella sonnei genome assembly 6350_1#12, scaffold ERS025887SCcontig000209, whole genome shotgun sequence (5816 bp)
Overview 1 RT 1: 2100-5315 bp Neighborhood of RT #1 [2100, 5341] sopB_N ParB COG3547 RVT-GII GIIM RVT-GII Feature: gene Location: 2100-3080 bp Ori: CST43974.1 Gene: sopB_2 Feature: domain Description: sopB_N Location: 2277-2472 bp Feature: domain Description: sopB_N Location: 2277-2472 bp Feature: domain Description: ParB Location: 2685-3060 bp Feature: domain Description: ParB Location: 2685-3060 bp Feature: gene Location: 3336-3821 bp Ori: CST43988.1 Feature: domain Description: COG3547 Location: 3354-3786 bp Feature: domain Description: COG3547 Location: 3354-3786 bp Feature: gene Location: 4110-4637 bp Ori: CST43999.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4116-4260 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 1 6-4260 bp Feature: domain Description: GIIM Note: maturase Location: 4338-4560 bp Feature: domain Description: GIIM Note: maturase Location: 4338-4560 bp Feature: gene Location: 4652-5341 bp Ori: CST44013.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4853-5315 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4853-531 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sopB_N (cd16394), ParB (smart00470), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: CXFI01000217.1 Shigella sonnei genome assembly 6350_1#12, scaffold ERS025887SCcontig000217, whole genome shotgun sequence (5030 bp)
Overview 1 RT 1: 171-4482 bp Neighborhood of RT #1 [171, 4484] Tra5 RVT-GII ushA Feature: gene Location: 171-392 bp Ori: CST44872.1 Feature: domain Description: Tra5 Location: 183-375 bp Feature: domain Description: Tra5 Location: 183-375 bp Feature: gene Location: 438-1532 bp Ori: CST44882.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 705-1362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 705-1362 bp Feature: gene Location: 2711-2896 bp Feature: gene Location: 2865-4484 bp Ori: CST44904.1 Gene: ushA_2 Feature: domain Description: ushA Location: 2880-4482 bp Feature: domain Description: ushA Location: 2 880-4482 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, ushA (PRK09558)

Seq: CXFI01000148.1 Shigella sonnei genome assembly 6350_1#12, scaffold ERS025887SCcontig000148, whole genome shotgun sequence (14699 bp)
Overview 1 RT 1: 10178-13407 bp Neighborhood of RT #1 [10178, 13412] DDE_Tnp_1 RVT-GII DDE_Tnp_1 RVT-GII Feature: gene Location: 10178-10318 bp Feature: gene Location: 10341-10823 bp Ori: CST34461.1 Feature: domain Description: DDE_Tnp_1 Location: 10512-10755 bp Feature: domain Description: DDE_Tnp_1 Location: 10512-10755 bp Feature: gene Location: 11149-11352 bp Ori: CST34475.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11257-11347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11257-113 47 bp Feature: gene Location: 11653-11823 bp Feature: gene Location: 12238-12378 bp Feature: gene Location: 12401-12883 bp Ori: CST34514.1 Feature: domain Description: DDE_Tnp_1 Location: 12572-12815 bp Feature: domain Description: DDE_Tnp_1 Location: 12572-12815 bp Feature: gene Location: 13209-13412 bp Ori: CST34532.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13317-13407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 3 17-13 407 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII