myRT

myRT report for GCA_001259735.1_12971_8_48

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Seq: CWZB01000284.1 Shigella sonnei genome assembly 12971_8#48, scaffold ERS432277SCcontig000284, whole genome shotgun sequence (2751 bp)
Overview 1 RT 1: 1306-2480 bp Neighborhood of RT #1 [1306, 2480] RVT-GII DDE_Tnp_1 Feature: gene Location: 1306-1509 bp Ori: CSN17907.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1414-1504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 4-1 504 bp Feature: gene Location: 1835-2317 bp Ori: CSN17934.1 Feature: domain Description: DDE_Tnp_1 Location: 2006-2249 bp Feature: domain Description: DDE_Tnp_1 Location: 2006-2249 bp Feature: gene Location: 2340-2480 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: CWZB01000219.1 Shigella sonnei genome assembly 12971_8#48, scaffold ERS432277SCcontig000219, whole genome shotgun sequence (4738 bp)
Overview 1 RT 1: 547-4423 bp Neighborhood of RT #1 [547, 4593] ushA RVT-GII Feature: gene Location: 547-2166 bp Ori: CSN04216.1 Gene: ushA_2 Feature: domain Description: ushA Location: 562-2164 bp Feature: domain Description: ushA Location: 562 -2 164 bp Feature: gene Location: 2135-2320 bp Feature: gene Location: 3499-4593 bp Ori: CSN04270.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3766-4423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3766-442 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ushA (PRK09558), RVT-GII

Seq: CWZB01000206.1 Shigella sonnei genome assembly 12971_8#48, scaffold ERS432277SCcontig000206, whole genome shotgun sequence (5404 bp)
Overview 1 RT 1: 1625-4840 bp Neighborhood of RT #1 [1625, 4866] sopB_N ParB COG3547 RVT-GII GIIM RVT-GII Feature: gene Location: 1625-2605 bp Ori: CSN00978.1 Gene: sopB_2 Feature: domain Description: sopB_N Location: 1802-1997 bp Feature: domain Description: sopB_N Location: 1802-1997 bp Feature: domain Description: ParB Location: 2210-2585 bp Feature: domain Description: ParB Location: 2210-2585 bp Feature: gene Location: 2861-3346 bp Ori: CSN01007.1 Feature: domain Description: COG3547 Location: 2879-3311 bp Feature: domain Description: COG3 547 Location: 2879-3 3 11 bp Feature: gene Location: 3635-4162 bp Ori: CSN01041.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3641-3785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 641-3 785 bp Feature: domain Description: GIIM Note: maturase Location: 3863-4085 bp Feature: domain Description: GIIM Note: maturase Location: 3 863 -4085 bp Feature: gene Location: 4177-4866 bp Ori: CSN01073.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4378-4840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 78-4840 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sopB_N (cd16394), ParB (smart00470), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)