myRT

myRT report for GCA_001260015.1_12830_1_39

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Seq: CWWX01000194.1 Shigella sonnei genome assembly 12830_1#39, scaffold ERS428543SCcontig000194, whole genome shotgun sequence (5954 bp)
Overview 1 RT 1: 564-3785 bp Neighborhood of RT #1 [564, 3805] RVT-GII RVT-GII GIIM COG3547 sopB_N ParB Feature: gene Location: 564-1253 bp Ori: CSK02588.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 765-1227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 765-1 227 bp Feature: gene Location: 1268-1795 bp Ori: CSK02614.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1274-1418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 274-1 41 8 bp Feature: domain Description: GIIM Note: maturase Location: 1496-1718 bp Feature: domain Description: GIIM Note: maturase Location: 1 496-1 71 8 bp Feature: gene Location: 2084-2569 bp Ori: CSK02644.1 Feature: domain Description: COG3547 Location: 2102-2534 bp Feature: domain Description: COG3547 Location: 21 02-2534 bp Feature: gene Location: 2825-3805 bp Ori: CSK02675.1 Gene: sopB_2 Feature: domain Description: sopB_N Location: 3002-3197 bp Feature: domain Description: sopB_N Location: 3002-31 97 bp Feature: domain Description: ParB Location: 3410-3785 bp Feature: domain Description: ParB Location: 341 0-3785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), sopB_N (cd16394), ParB (smart00470)

Seq: CWWX01000265.1 Shigella sonnei genome assembly 12830_1#39, scaffold ERS428543SCcontig000265, whole genome shotgun sequence (3250 bp)
Overview 1 RT 1: 1368-2542 bp Neighborhood of RT #1 [1368, 2542] RVT-GII DDE_Tnp_1 Feature: gene Location: 1368-1571 bp Ori: CSK17575.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1476-1566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1476-1566 bp Feature: gene Location: 1897-2379 bp Ori: CSK17600.1 Feature: domain Description: DDE_Tnp_1 Location: 2068-2311 bp Feature: domain Description: DDE_Tnp_1 Location: 2 068-2 311 bp Feature: gene Location: 2402-2542 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: CWWX01000212.1 Shigella sonnei genome assembly 12830_1#39, scaffold ERS428543SCcontig000212, whole genome shotgun sequence (4967 bp)
Overview 1 RT 1: 655-4531 bp Neighborhood of RT #1 [655, 4701] ushA RVT-GII Feature: gene Location: 655-2274 bp Ori: CSK06731.1 Gene: ushA_2 Feature: domain Description: ushA Location: 670-2272 bp Feature: domain Description: ushA Location: 670-2272 bp Feature: gene Location: 2243-2428 bp Feature: gene Location: 3607-4701 bp Ori: CSK06778.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3874-4531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 874-453 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ushA (PRK09558), RVT-GII