myRT

myRT report for GCA_001260135.1_5236_8_3

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Seq: CXDR01000198.1 Shigella sonnei genome assembly 5236_8#3, scaffold ERS009866SCcontig000198, whole genome shotgun sequence (5296 bp)
Overview 1 RT 1: 470-3691 bp Neighborhood of RT #1 [470, 3711] RVT-GII RVT-GII GIIM COG3547 sopB_N ParB Feature: gene Location: 470-1159 bp Ori: CSR57456.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 671-1133 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 671 -1 1 33 bp Feature: gene Location: 1174-1701 bp Ori: CSR57479.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1180-1324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 80-1 324 bp Feature: domain Description: GIIM Note: maturase Location: 1402-1624 bp Feature: domain Description: GIIM Note: maturase Location: 1 402-1 624 bp Feature: gene Location: 1990-2475 bp Ori: CSR57507.1 Feature: domain Description: COG3547 Location: 2008-2440 bp Feature: domain Description: COG3547 Location: 2008-2440 bp Feature: gene Location: 2731-3711 bp Ori: CSR57531.1 Gene: sopB_2 Feature: domain Description: sopB_N Location: 2908-3103 bp Feature: domain Description: sopB_N Location: 2908-31 03 bp Feature: domain Description: ParB Location: 3316-3691 bp Feature: domain Description: ParB Location: 331 6-3691 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), sopB_N (cd16394), ParB (smart00470)

Seq: CXDR01000241.1 Shigella sonnei genome assembly 5236_8#3, scaffold ERS009866SCcontig000241, whole genome shotgun sequence (3210 bp)
Overview 1 RT 1: 1251-2425 bp Neighborhood of RT #1 [1251, 2425] RVT-GII DDE_Tnp_1 Feature: gene Location: 1251-1454 bp Ori: CSR65971.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1359-1449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1359-1449 bp Feature: gene Location: 1780-2262 bp Ori: CSR65992.1 Feature: domain Description: DDE_Tnp_1 Location: 1951-2194 bp Feature: domain Description: DDE_Tnp_1 Location: 1951-2 194 bp Feature: gene Location: 2285-2425 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: CXDR01000206.1 Shigella sonnei genome assembly 5236_8#3, scaffold ERS009866SCcontig000206, whole genome shotgun sequence (4748 bp)
Overview 1 RT 1: 35-4346 bp Neighborhood of RT #1 [35, 4348] Tra5 RVT-GII ushA Feature: gene Location: 35-256 bp Ori: CSR59046.1 Feature: domain Description: Tra5 Location: 47-239 bp Feature: domain Description: Tra5 Location: 47-23 9 bp Feature: gene Location: 302-1396 bp Ori: CSR59076.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 569-1226 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 569-1226 bp Feature: gene Location: 2575-2760 bp Feature: gene Location: 2729-4348 bp Ori: CSR59129.1 Gene: ushA_2 Feature: domain Description: ushA Location: 2744-4346 bp Feature: domain Description: ushA Location: 2744-43 46 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, ushA (PRK09558)