myRT

myRT report for GCA_001260235.1_5236_1_7

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Seq: CXBM01000218.1 Shigella sonnei genome assembly 5236_1#7, scaffold ERS009800SCcontig000218, whole genome shotgun sequence (4346 bp)
Overview 1 RT 1: 5-3533 bp Neighborhood of RT #1 [5, 3533] HTH_23 HTH_33 DDE_3 RVT-GII DDE_Tnp_1 Feature: gene Location: 5-1036 bp Ori: CSO99247.1 Feature: domain Description: HTH_23 Location: 83-224 bp Feature: domain Description: HTH_23 Location: 83-224 bp Feature: domain Description: HTH_33 Location: 329-476 bp Feature: domain Description: HTH_33 Location: 329-476 bp Feature: domain Description: DDE_3 Location: 536-953 bp Feature: domain Description: DDE_3 Location: 536-953 bp Feature: gene Location: 2359-2562 bp Ori: CSO99256.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2467-2557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2467-2557 bp Feature: gene Location: 2888-3370 bp Ori: CSO99269.1 Feature: domain Description: DDE_Tnp_1 Location: 3059-3302 bp Feature: domain Description: DDE_Tnp_1 Location: 3059-3302 bp Feature: gene Location: 3393-3533 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), HTH_33 (pfam13592), DDE_3 (pfam13358), RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: CXBM01000272.1 Shigella sonnei genome assembly 5236_1#7, scaffold ERS009800SCcontig000272, whole genome shotgun sequence (2300 bp)
Overview 1 RT 1: 65-1256 bp Neighborhood of RT #1 [65, 1426] Tra5 RVT-GII Feature: gene Location: 65-286 bp Ori: CSP04457.1 Feature: domain Description: Tra5 Location: 77-269 bp Feature: domain Description: Tra5 Location: 77-2 69 bp Feature: gene Location: 332-1426 bp Ori: CSP04471.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 599-1256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 599-12 56 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII

Seq: CXBM01000203.1 Shigella sonnei genome assembly 5236_1#7, scaffold ERS009800SCcontig000203, whole genome shotgun sequence (5296 bp)
Overview 1 RT 1: 1586-4801 bp Neighborhood of RT #1 [1586, 4827] sopB_N ParB COG3547 RVT-GII GIIM RVT-GII Feature: gene Location: 1586-2566 bp Ori: CSO97702.1 Gene: sopB_2 Feature: domain Description: sopB_N Location: 1763-1958 bp Feature: domain Description: sopB_N Location: 1763 -1958 bp Feature: domain Description: ParB Location: 2171-2546 bp Feature: domain Description: ParB Location: 2171-2546 bp Feature: gene Location: 2822-3307 bp Ori: CSO97714.1 Feature: domain Description: COG3547 Location: 2840-3272 bp Feature: domain Description: COG3 547 Location: 2840-3 272 bp Feature: gene Location: 3596-4123 bp Ori: CSO97731.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3602-3746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 602-3 746 bp Feature: domain Description: GIIM Note: maturase Location: 3824-4046 bp Feature: domain Description: GIIM Note: maturase Location: 3 824-4046 bp Feature: gene Location: 4138-4827 bp Ori: CSO97743.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4339-4801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 3 9-4801 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sopB_N (cd16394), ParB (smart00470), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)