myRT

myRT report for GCA_001260355.1_8290_5_4

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Seq: CXLS01000196.1 Shigella sonnei genome assembly 8290_5#4, scaffold ERS127220SCcontig000196, whole genome shotgun sequence (5926 bp)
Overview 1 RT 1: 564-3785 bp Neighborhood of RT #1 [564, 3805] RVT-GII RVT-GII GIIM COG3547 sopB_N ParB Feature: gene Location: 564-1253 bp Ori: CTA86923.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 765-1227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 765-1 227 bp Feature: gene Location: 1268-1795 bp Ori: CTA86938.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1274-1418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 274-1 41 8 bp Feature: domain Description: GIIM Note: maturase Location: 1496-1718 bp Feature: domain Description: GIIM Note: maturase Location: 1 496-1 71 8 bp Feature: gene Location: 2084-2569 bp Ori: CTA86949.1 Feature: domain Description: COG3547 Location: 2102-2534 bp Feature: domain Description: COG3547 Location: 21 02-2534 bp Feature: gene Location: 2825-3805 bp Ori: CTA86961.1 Gene: sopB_3 Feature: domain Description: sopB_N Location: 3002-3197 bp Feature: domain Description: sopB_N Location: 3002-31 97 bp Feature: domain Description: ParB Location: 3410-3785 bp Feature: domain Description: ParB Location: 341 0-3785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), sopB_N (cd16394), ParB (smart00470)

Seq: CXLS01000206.1 Shigella sonnei genome assembly 8290_5#4, scaffold ERS127220SCcontig000206, whole genome shotgun sequence (5348 bp)
Overview 1 RT 1: 199-4510 bp Neighborhood of RT #1 [199, 4512] Tra5 RVT-GII ushA Feature: gene Location: 199-420 bp Ori: CTA87884.1 Feature: domain Description: Tra5 Location: 211-403 bp Feature: domain Description: Tra5 Location: 2 11-403 bp Feature: gene Location: 466-1560 bp Ori: CTA87895.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 733-1390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 733-1390 bp Feature: gene Location: 2739-2924 bp Feature: gene Location: 2893-4512 bp Ori: CTA87915.1 Gene: ushA_2 Feature: domain Description: ushA Location: 2908-4510 bp Feature: domain Description: ushA Location: 2 908-4510 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, ushA (PRK09558)

Seq: CXLS01000257.1 Shigella sonnei genome assembly 8290_5#4, scaffold ERS127220SCcontig000257, whole genome shotgun sequence (3734 bp)
Overview 1 RT 1: 1245-2414 bp Neighborhood of RT #1 [1245, 2419] DDE_Tnp_1 RVT-GII Feature: gene Location: 1245-1385 bp Feature: gene Location: 1408-1890 bp Ori: CTA91984.1 Feature: domain Description: DDE_Tnp_1 Location: 1579-1822 bp Feature: domain Description: DDE_Tnp_1 Location: 1579-1822 bp Feature: gene Location: 2216-2419 bp Ori: CTA91997.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2324-2414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23 24-2414 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII