myRT

myRT report for GCA_001260475.1_5236_2_8

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Seq: CXCD01000212.1 Shigella sonnei genome assembly 5236_2#8, scaffold ERS009813SCcontig000212, whole genome shotgun sequence (4856 bp)
Overview 1 RT 1: 143-4454 bp Neighborhood of RT #1 [143, 4456] Tra5 RVT-GII ushA Feature: gene Location: 143-364 bp Ori: CSP69848.1 Feature: domain Description: Tra5 Location: 155-347 bp Feature: domain Description: Tra5 Location: 1 55-347 bp Feature: gene Location: 410-1504 bp Ori: CSP69862.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 677-1334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 677-1 334 bp Feature: gene Location: 2683-2868 bp Feature: gene Location: 2837-4456 bp Ori: CSP69894.1 Gene: ushA_2 Feature: domain Description: ushA Location: 2852-4454 bp Feature: domain Description: ushA Location: 2852-4454 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, ushA (PRK09558)

Seq: CXCD01000197.1 Shigella sonnei genome assembly 5236_2#8, scaffold ERS009813SCcontig000197, whole genome shotgun sequence (5753 bp)
Overview 1 RT 1: 2058-5273 bp Neighborhood of RT #1 [2058, 5299] sopB_N ParB COG3547 RVT-GII GIIM RVT-GII Feature: gene Location: 2058-3038 bp Ori: CSP67787.1 Gene: sopB_2 Feature: domain Description: sopB_N Location: 2235-2430 bp Feature: domain Description: sopB_N Location: 2 2 35-2 430 bp Feature: domain Description: ParB Location: 2643-3018 bp Feature: domain Description: ParB Location: 2 643-3018 bp Feature: gene Location: 3294-3779 bp Ori: CSP67804.1 Feature: domain Description: COG3547 Location: 3312-3744 bp Feature: domain Description: COG3547 Location: 3312 -3744 bp Feature: gene Location: 4068-4595 bp Ori: CSP67820.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4074-4218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4074-42 18 bp Feature: domain Description: GIIM Note: maturase Location: 4296-4518 bp Feature: domain Description: GIIM Note: maturase Location: 42 96-4518 bp Feature: gene Location: 4610-5299 bp Ori: CSP67831.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4811-5273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4811-52 73 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sopB_N (cd16394), ParB (smart00470), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: CXCD01000270.1 Shigella sonnei genome assembly 5236_2#8, scaffold ERS009813SCcontig000270, whole genome shotgun sequence (3211 bp)
Overview 1 RT 1: 1251-2425 bp Neighborhood of RT #1 [1251, 2425] RVT-GII DDE_Tnp_1 Feature: gene Location: 1251-1454 bp Ori: CSP75843.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1359-1449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 59-1449 bp Feature: gene Location: 1780-2262 bp Ori: CSP75860.1 Feature: domain Description: DDE_Tnp_1 Location: 1951-2194 bp Feature: domain Description: DDE_Tnp_1 Location: 1951-2194 bp Feature: gene Location: 2285-2425 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609)