myRT

myRT report for GCA_001261115.1_9870_6_32

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Seq: CXMY01000211.1 Shigella sonnei genome assembly 9870_6#32, scaffold ERS221998SCcontig000211, whole genome shotgun sequence (5243 bp)
Overview 1 RT 1: 732-5028 bp Neighborhood of RT #1 [732, 5045] ushA RVT-GII Tra5 Feature: gene Location: 732-2351 bp Ori: CTC42500.1 Gene: ushA_2 Feature: domain Description: ushA Location: 747-2349 bp Feature: domain Description: ushA Location: 747-2349 bp Feature: gene Location: 2320-2505 bp Feature: gene Location: 3684-4778 bp Ori: CTC42521.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3951-4608 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3951 -4608 bp Feature: gene Location: 4824-5045 bp Ori: CTC42534.1 Feature: domain Description: Tra5 Location: 4836-5028 bp Feature: domain Description: Tra5 Location: 4836-5028 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ushA (PRK09558), RVT-GII, Tra5 (COG2801)

Seq: CXMY01000254.1 Shigella sonnei genome assembly 9870_6#32, scaffold ERS221998SCcontig000254, whole genome shotgun sequence (3603 bp)
Overview 1 RT 1: 1306-2480 bp Neighborhood of RT #1 [1306, 2480] RVT-GII DDE_Tnp_1 Feature: gene Location: 1306-1509 bp Ori: CTC45991.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1414-1504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1414-1504 bp Feature: gene Location: 1835-2317 bp Ori: CTC46016.1 Feature: domain Description: DDE_Tnp_1 Location: 2006-2249 bp Feature: domain Description: DDE_Tnp_1 Location: 2 006-2 2 49 bp Feature: gene Location: 2340-2480 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: CXMY01000200.1 Shigella sonnei genome assembly 9870_6#32, scaffold ERS221998SCcontig000200, whole genome shotgun sequence (5911 bp)
Overview 1 RT 1: 2150-5365 bp Neighborhood of RT #1 [2150, 5391] sopB_N ParB COG3547 RVT-GII GIIM RVT-GII Feature: gene Location: 2150-3130 bp Ori: CTC41490.1 Gene: sopB_2 Feature: domain Description: sopB_N Location: 2327-2522 bp Feature: domain Description: sopB_N Location: 23 27-2522 bp Feature: domain Description: ParB Location: 2735-3110 bp Feature: domain Description: ParB Location: 273 5-3 110 bp Feature: gene Location: 3386-3871 bp Ori: CTC41501.1 Feature: domain Description: COG3547 Location: 3404-3836 bp Feature: domain Description: COG3 547 Location: 3 404-3 83 6 bp Feature: gene Location: 4160-4687 bp Ori: CTC41510.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4166-4310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4166-43 10 bp Feature: domain Description: GIIM Note: maturase Location: 4388-4610 bp Feature: domain Description: GIIM Note: maturase Location: 43 88-4610 bp Feature: gene Location: 4702-5391 bp Ori: CTC41521.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4903-5365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4903 -53 65 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sopB_N (cd16394), ParB (smart00470), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)