myRT

myRT report for GCA_001261175.1_12971_8_68

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Seq: CWZV01000201.1 Shigella sonnei genome assembly 12971_8#68, scaffold ERS432299SCcontig000201, whole genome shotgun sequence (5934 bp)
Overview 1 RT 1: 550-3771 bp Neighborhood of RT #1 [550, 3791] RVT-GII RVT-GII GIIM COG3547 sopB_N ParB Feature: gene Location: 550-1239 bp Ori: CSN33938.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 751-1213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 751 -1 21 3 bp Feature: gene Location: 1254-1781 bp Ori: CSN33958.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1260-1404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 260-1 404 bp Feature: domain Description: GIIM Note: maturase Location: 1482-1704 bp Feature: domain Description: GIIM Note: maturase Location: 1 482-1 704 bp Feature: gene Location: 2070-2555 bp Ori: CSN33975.1 Feature: domain Description: COG3547 Location: 2088-2520 bp Feature: domain Description: COG3547 Location: 2088-2520 bp Feature: gene Location: 2811-3791 bp Ori: CSN33990.1 Gene: sopB_2 Feature: domain Description: sopB_N Location: 2988-3183 bp Feature: domain Description: sopB_N Location: 2988-31 83 bp Feature: domain Description: ParB Location: 3396-3771 bp Feature: domain Description: ParB Location: 3396-3771 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), sopB_N (cd16394), ParB (smart00470)

Seq: CWZV01000214.1 Shigella sonnei genome assembly 12971_8#68, scaffold ERS432299SCcontig000214, whole genome shotgun sequence (5058 bp)
Overview 1 RT 1: 547-4843 bp Neighborhood of RT #1 [547, 4860] ushA RVT-GII Tra5 Feature: gene Location: 547-2166 bp Ori: CSN35859.1 Gene: ushA_2 Feature: domain Description: ushA Location: 562-2164 bp Feature: domain Description: ushA Location: 562 -2 164 bp Feature: gene Location: 2135-2320 bp Feature: gene Location: 3499-4593 bp Ori: CSN35894.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3766-4423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3766-442 3 bp Feature: gene Location: 4639-4860 bp Ori: CSN35909.1 Feature: domain Description: Tra5 Location: 4651-4843 bp Feature: domain Description: Tra5 Location: 4651-4843 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ushA (PRK09558), RVT-GII, Tra5 (COG2801)

Seq: CWZV01000115.1 Shigella sonnei genome assembly 12971_8#68, scaffold ERS432299SCcontig000115, whole genome shotgun sequence (13973 bp)
Overview 1 RT 1: 748-6232 bp Neighborhood of RT #1 [748, 6234] DDE_Tnp_1 RVT-GII HTH_23 HTH_33 DDE_3 PRK12809 Feature: gene Location: 748-888 bp Feature: gene Location: 911-1393 bp Ori: CSN12033.1 Feature: domain Description: DDE_Tnp_1 Location: 1082-1325 bp Feature: domain Description: DDE_Tnp_1 Location: 1082-13 25 bp Feature: gene Location: 1719-1922 bp Ori: CSN12049.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1827-1917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1827-1917 bp Feature: gene Location: 3245-4276 bp Ori: CSN12072.1 Feature: domain Description: HTH_23 Location: 3323-3464 bp Feature: domain Description: HTH_23 Location: 3 3 23 -3 464 bp Feature: domain Description: HTH_33 Location: 3569-3716 bp Feature: domain Description: HTH_3 3 Location: 3 569-3 716 bp Feature: domain Description: DDE_3 Location: 3776-4193 bp Feature: domain Description: DDE_3 Location: 3 776-4193 bp Feature: gene Location: 4315-6234 bp Ori: CSN12095.1 Gene: ygfT Feature: domain Description: PRK12809 Location: 4318-6232 bp Feature: domain Description: PRK12809 Location: 43 18-623 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, HTH_23 (pfam13384), HTH_33 (pfam13592), DDE_3 (pfam13358), PRK12809 (putative oxidoreductase Fe-S binding subunit; Reviewed)