myRT

myRT report for GCA_001261575.1_12844_1_60

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Seq: CWXR01000273.1 Shigella sonnei genome assembly 12844_1#60, scaffold ERS428564SCcontig000273, whole genome shotgun sequence (3234 bp)
Overview 1 RT 1: 1374-2548 bp Neighborhood of RT #1 [1374, 2548] RVT-GII DDE_Tnp_1 Feature: gene Location: 1374-1577 bp Ori: CSK86650.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1482-1572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 482-1 572 bp Feature: gene Location: 1903-2385 bp Ori: CSK86659.1 Feature: domain Description: DDE_Tnp_1 Location: 2074-2317 bp Feature: domain Description: DDE_Tnp_1 Location: 2074-231 7 bp Feature: gene Location: 2408-2548 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: CWXR01000200.1 Shigella sonnei genome assembly 12844_1#60, scaffold ERS428564SCcontig000200, whole genome shotgun sequence (5954 bp)
Overview 1 RT 1: 564-3785 bp Neighborhood of RT #1 [564, 3805] RVT-GII RVT-GII GIIM COG3547 sopB_N ParB Feature: gene Location: 564-1253 bp Ori: CSK80332.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 765-1227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 765-12 2 7 bp Feature: gene Location: 1268-1795 bp Ori: CSK80348.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1274-1418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 74-1418 bp Feature: domain Description: GIIM Note: maturase Location: 1496-1718 bp Feature: domain Description: GIIM Note: maturase Location: 1496-1718 bp Feature: gene Location: 2084-2569 bp Ori: CSK80366.1 Feature: domain Description: COG3547 Location: 2102-2534 bp Feature: domain Description: COG3547 Location: 2 102 -2 534 bp Feature: gene Location: 2825-3805 bp Ori: CSK80379.1 Gene: sopB_2 Feature: domain Description: sopB_N Location: 3002-3197 bp Feature: domain Description: sopB_N Location: 3002 -3197 bp Feature: domain Description: ParB Location: 3410-3785 bp Feature: domain Description: ParB Location: 3410-3785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), sopB_N (cd16394), ParB (smart00470)

Seq: CWXR01000217.1 Shigella sonnei genome assembly 12844_1#60, scaffold ERS428564SCcontig000217, whole genome shotgun sequence (4967 bp)
Overview 1 RT 1: 267-4311 bp Neighborhood of RT #1 [267, 4313] RVT-GII ushA Feature: gene Location: 267-1361 bp Ori: CSK82125.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 534-1191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53 4-1191 bp Feature: gene Location: 2540-2725 bp Feature: gene Location: 2694-4313 bp Ori: CSK82148.1 Gene: ushA_2 Feature: domain Description: ushA Location: 2709-4311 bp Feature: domain Description: ushA Location: 2709-43 11 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, ushA (PRK09558)