myRT

myRT report for GCA_001261635.1_12850_1_49

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Seq: CWYA01000275.1 Shigella sonnei genome assembly 12850_1#49, scaffold ERS428553SCcontig000275, whole genome shotgun sequence (3231 bp)
Overview 1 RT 1: 687-1856 bp Neighborhood of RT #1 [687, 1861] DDE_Tnp_1 RVT-GII Feature: gene Location: 687-827 bp Feature: gene Location: 850-1332 bp Ori: CSL12185.1 Feature: domain Description: DDE_Tnp_1 Location: 1021-1264 bp Feature: domain Description: DDE_Tnp_1 Location: 1 021 -1 264 bp Feature: gene Location: 1658-1861 bp Ori: CSL12188.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1766-1856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 766-1 856 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII

Seq: CWYA01000207.1 Shigella sonnei genome assembly 12850_1#49, scaffold ERS428553SCcontig000207, whole genome shotgun sequence (5613 bp)
Overview 1 RT 1: 1809-5024 bp Neighborhood of RT #1 [1809, 5050] sopB_N ParB COG3547 RVT-GII GIIM RVT-GII Feature: gene Location: 1809-2789 bp Ori: CSL08431.1 Gene: sopB_2 Feature: domain Description: sopB_N Location: 1986-2181 bp Feature: domain Description: sopB_N Location: 1986-2 181 bp Feature: domain Description: ParB Location: 2394-2769 bp Feature: domain Description: ParB Location: 2 394-2 769 bp Feature: gene Location: 3045-3530 bp Ori: CSL08439.1 Feature: domain Description: COG3547 Location: 3063-3495 bp Feature: domain Description: COG3547 Location: 3063-3495 bp Feature: gene Location: 3819-4346 bp Ori: CSL08449.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3825-3969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 382 5-3969 bp Feature: domain Description: GIIM Note: maturase Location: 4047-4269 bp Feature: domain Description: GIIM Note: maturase Location: 4047-42 69 bp Feature: gene Location: 4361-5050 bp Ori: CSL08454.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4562-5024 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4562 -502 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sopB_N (cd16394), ParB (smart00470), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: CWYA01000221.1 Shigella sonnei genome assembly 12850_1#49, scaffold ERS428553SCcontig000221, whole genome shotgun sequence (4967 bp)
Overview 1 RT 1: 655-4531 bp Neighborhood of RT #1 [655, 4701] ushA RVT-GII Feature: gene Location: 655-2274 bp Ori: CSL09393.1 Gene: ushA_2 Feature: domain Description: ushA Location: 670-2272 bp Feature: domain Description: ushA Location: 670-2272 bp Feature: gene Location: 2243-2428 bp Feature: gene Location: 3607-4701 bp Ori: CSL09408.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3874-4531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 874-453 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ushA (PRK09558), RVT-GII