myRT

myRT report for GCA_001261655.1_5417_3_5

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Seq: CXEX01000267.1 Shigella sonnei genome assembly 5417_3#5, scaffold ERS008190SCcontig000267, whole genome shotgun sequence (3310 bp)
Overview 1 RT 1: 1306-2480 bp Neighborhood of RT #1 [1306, 2480] RVT-GII DDE_Tnp_1 Feature: gene Location: 1306-1509 bp Ori: CST07910.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1414-1504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 4-1 504 bp Feature: gene Location: 1835-2317 bp Ori: CST07922.1 Feature: domain Description: DDE_Tnp_1 Location: 2006-2249 bp Feature: domain Description: DDE_Tnp_1 Location: 2006-2249 bp Feature: gene Location: 2340-2480 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: CXEX01000294.1 Shigella sonnei genome assembly 5417_3#5, scaffold ERS008190SCcontig000294, whole genome shotgun sequence (2162 bp)
Overview 1 RT 1: 171-1362 bp Neighborhood of RT #1 [171, 1532] Tra5 RVT-GII Feature: gene Location: 171-392 bp Ori: CST10902.1 Feature: domain Description: Tra5 Location: 183-375 bp Feature: domain Description: Tra5 Location: 183-375 bp Feature: gene Location: 438-1532 bp Ori: CST10923.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 705-1362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 705-1362 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII

Seq: CXEX01000347.1 Shigella sonnei genome assembly 5417_3#5, scaffold ERS008190SCcontig000347, whole genome shotgun sequence (1246 bp)
Overview 1 RT 1: 506-1169 bp Neighborhood of RT #1 [506, 1195] RVT-GII Feature: gene Location: 506-1195 bp Ori: CST15070.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 707-1169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 707-1169 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII