myRT

myRT report for GCA_001261675.1_8290_5_14

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Seq: CXLQ01000215.1 Shigella sonnei genome assembly 8290_5#14, scaffold ERS127230SCcontig000215, whole genome shotgun sequence (5283 bp)
Overview 1 RT 1: 772-5068 bp Neighborhood of RT #1 [772, 5085] ushA RVT-GII Tra5 Feature: gene Location: 772-2391 bp Ori: CTA68358.1 Gene: ushA_2 Feature: domain Description: ushA Location: 787-2389 bp Feature: domain Description: ushA Location: 787-2389 bp Feature: gene Location: 2360-2545 bp Feature: gene Location: 3724-4818 bp Ori: CTA68371.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3991-4648 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3991 -4648 bp Feature: gene Location: 4864-5085 bp Ori: CTA68377.1 Feature: domain Description: Tra5 Location: 4876-5068 bp Feature: domain Description: Tra5 Location: 4876-5068 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ushA (PRK09558), RVT-GII, Tra5 (COG2801)

Seq: CXLQ01000205.1 Shigella sonnei genome assembly 8290_5#14, scaffold ERS127230SCcontig000205, whole genome shotgun sequence (5936 bp)
Overview 1 RT 1: 546-3767 bp Neighborhood of RT #1 [546, 3787] RVT-GII RVT-GII GIIM COG3547 sopB_N ParB Feature: gene Location: 546-1235 bp Ori: CTA67800.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 747-1209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 747-12 09 bp Feature: gene Location: 1250-1777 bp Ori: CTA67805.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1256-1400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 56-1400 bp Feature: domain Description: GIIM Note: maturase Location: 1478-1700 bp Feature: domain Description: GIIM Note: maturase Location: 1478-1700 bp Feature: gene Location: 2066-2551 bp Ori: CTA67813.1 Feature: domain Description: COG3547 Location: 2084-2516 bp Feature: domain Description: COG3547 Location: 2 084-2 516 bp Feature: gene Location: 2807-3787 bp Ori: CTA67819.1 Gene: sopB_3 Feature: domain Description: sopB_N Location: 2984-3179 bp Feature: domain Description: sopB_N Location: 2 984-3179 bp Feature: domain Description: ParB Location: 3392-3767 bp Feature: domain Description: ParB Location: 3392 -3767 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), sopB_N (cd16394), ParB (smart00470)

Seq: CXLQ01000272.1 Shigella sonnei genome assembly 8290_5#14, scaffold ERS127230SCcontig000272, whole genome shotgun sequence (3369 bp)
Overview 1 RT 1: 1336-2510 bp Neighborhood of RT #1 [1336, 2510] RVT-GII DDE_Tnp_1 Feature: gene Location: 1336-1539 bp Ori: CTA71016.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1444-1534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1444-153 4 bp Feature: gene Location: 1865-2347 bp Ori: CTA71024.1 Feature: domain Description: DDE_Tnp_1 Location: 2036-2279 bp Feature: domain Description: DDE_Tnp_1 Location: 203 6-2279 bp Feature: gene Location: 2370-2510 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609)