myRT

myRT report for GCA_001261735.1_BGC7_v2

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Seq: CVRP01000010.1 Dysgonomonas sp. BGC7 genome assembly BGC7_v2, contig gnlUCONNMISEQBGC7_contig010, whole genome shotgun sequence (497016 bp)
Overview 1 RT 1: 387812-398364 bp Neighborhood of RT #1 [387812, 398372] DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons PRK15098 Feature: gene Location: 387812-388141 bp Feature: gene Location: 388541-394336 bp Feature: domain Description: DUF4011 Location: 389693-390206 bp Feature: domain Description: DUF401 1 Location: 389693-390206 bp Feature: domain Description: DEXXQc_SF1 Location: 390545-390926 bp Feature: domain Description: DEXXQc_SF1 Location: 390545-390926 bp Feature: domain Description: DEXXQc_SF1 Location: 391976-392738 bp Feature: domain Description: DEXXQc_SF1 Location: 391 976-392738 bp Feature: domain Description: TIGR00376 Location: 392864-393359 bp Feature: domain Description: TIGR00376 Location: 392864-393359 bp Feature: domain Description: MTES_1575 Location: 393407-393686 bp Feature: domain Description: MTES_1 575 Location: 393407-393686 bp Feature: domain Description: DUF3320 Location: 393848-393992 bp Feature: domain Description: DUF3320 Location: 393848-393992 bp Feature: gene Location: 394340-395569 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 394778-395324 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 394778-395324 bp Feature: gene Location: 395763-396020 bp Feature: gene Location: 396126-398372 bp Feature: domain Description: PRK15098 Location: 396438-398364 bp Feature: domain Description: PRK1 5098 Location: 396438-398364 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons, PRK15098 (beta-glucosidase BglX)

Seq: CVRP01000013.1 Dysgonomonas sp. BGC7 genome assembly BGC7_v2, contig gnlUCONNMISEQBGC7_contig013, whole genome shotgun sequence (239241 bp)
Overview 1 RT 1: 201825-205910 bp Neighborhood of RT #1 [201825, 205927] RVT-UG2 HTH_17 Feature: gene Location: 201825-202439 bp Feature: gene Location: 202448-203266 bp Feature: gene Location: 203330-204970 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 203636-204578 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 2 03636-2 04578 bp Feature: gene Location: 205048-205194 bp Feature: gene Location: 205652-205927 bp Feature: domain Description: HTH_17 Location: 205766-205910 bp Feature: domain Description: HTH_17 Location: 2 05766-2 05910 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2, HTH_17 (pfam12728)

Seq: CVRP01000022.1 Dysgonomonas sp. BGC7 genome assembly BGC7_v2, contig gnlUCONNMISEQBGC7_contig022, whole genome shotgun sequence (57916 bp)
Overview 1 RT 1: 55630-57401 bp Neighborhood of RT #1 [55630, 57604] DUF4494 FtsK_gamma RVT-DGRs Feature: gene Location: 55630-56304 bp Feature: domain Description: DUF4494 Location: 55642-56050 bp Feature: domain Description: DUF4494 Location: 55642-56050 bp Feature: domain Description: FtsK_gamma Location: 56110-56287 bp Feature: domain Description: FtsK_gamma Location: 56110-56287 bp Feature: gene Location: 56317-56577 bp Feature: gene Location: 56606-57604 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 56816-57401 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 56816-57401 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4494 (pfam14902), FtsK_gamma, RVT-DGRs

Seq: CVRP01000026.1 Dysgonomonas sp. BGC7 genome assembly BGC7_v2, contig gnlUCONNMISEQBGC7_contig026, whole genome shotgun sequence (2522 bp)
Overview 1 RT 1: 119-2435 bp Neighborhood of RT #1 [119, 2435] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 119-1927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 383-1205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 383-1205 bp Feature: domain Description: Intron_maturas2 Location: 1277-1586 bp Feature: domain Description: Intron_maturas2 Location: 1277-1586 bp Feature: domain Description: HNHc Note: nucleases Location: 1760-1913 bp Feature: domain Description: HNHc Note: nucleases Location: 1760-1913 bp Feature: gene Location: 1935-2435 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: CVRP01000032.1 Dysgonomonas sp. BGC7 genome assembly BGC7_v2, contig gnlUCONNMISEQBGC7_contig032, whole genome shotgun sequence (2481 bp)
Overview 1 RT 1: 3-2342 bp Neighborhood of RT #1 [3, 2371] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 3-131 bp Feature: gene Location: 566-2371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 830-1652 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 830-165 2 bp Feature: domain Description: Intron_maturas2 Location: 1763-2036 bp Feature: domain Description: Intron_maturas2 Location: 1763-2036 bp Feature: domain Description: HNHc Note: nucleases Location: 2198-2342 bp Feature: domain Description: HNHc Note: nucleases Location: 2198-2342 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: CVRP01000038.1 Dysgonomonas sp. BGC7 genome assembly BGC7_v2, contig gnlUCONNMISEQBGC7_contig038, whole genome shotgun sequence (1415 bp)
Overview 1 RT 1: 122-917 bp Neighborhood of RT #1 [122, 1120] RVT-DGRs Feature: gene Location: 122-1120 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 332-917 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 332-917 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs