myRT

myRT report for GCA_001262605.1_ASM126260v1

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Seq: LGTC01000001.1 Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933 ctg1, whole genome shotgun sequence (6878816 bp)
Overview 1 RT 1: 1298806-1304517 bp 2 RT 2: 3368373-3373750 bp 3 RT 3: 3745651-3751225 bp 4 RT 4: 3776715-3782536 bp 5 RT 5: 4053375-4058492 bp 6 RT 6: 5999141-6001852 bp 7 RT 7: 6256509-6264910 bp 8 RT 8: 6456703-6466757 bp Neighborhood of RT #1 [1298806, 1304517] TPR TPR RVT-GII GIIM yflN-like_MBL-fold Neighborhood of RT #2 [3368373, 3373750] DUF820 DUF4830 DUF4829 RVT-GII GIIM RVT-GII DUF3221 Neighborhood of RT #3 [3745651, 3751233] RVT_N RVT-GII GIIM DUF2310 Zn_Tnp_IS91 Y2_Tnp Zn-ribbon Neighborhood of RT #4 [3776715, 3782536] YAcAr DEDD_Tnp_IS110 Transposase_20 RVT-GII Intron_maturas2 HNHc Neighborhood of RT #5 [4053375, 4061320] DDE_Tnp_IS66 DDE_Tnp_IS66 RVT-Retrons TerD Neighborhood of RT #6 [5999141, 6001866] KOG4768 RVT-GII INT_RitA_C_like Neighborhood of RT #7 [6256509, 6265122] zf-IS66 DDE_Tnp_IS66 RVT-GII Intron_maturas2 RVT-GII Intron_maturas2 HNHc Transposase_20 DEDD_Tnp_IS110 Neighborhood of RT #8 [6456703, 6466780] LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII Intron_maturas2 HNHc DEDD_Tnp_IS110 Transposase_20 RVT-GII SymE_toxin Feature: gene Location: 1298806-1299468 bp Ori: KNY25915.1 Feature: domain Description: TPR Location: 1298869-1299085 bp Feature: domain Description: TPR Location: 1 298869-1 299085 bp Feature: domain Description: TPR Location: 1299103-1299364 bp Feature: domain Description: TPR Location: 1 2991 03-1 299364 bp Feature: gene Location: 1299465-1299653 bp Feature: gene Location: 1300191-1302068 bp Ori: KNY25917.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1300485-1301193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 300485-1 301 1 93 bp Feature: domain Description: GIIM Note: maturase Location: 1301304-1301508 bp Feature: domain Description: GIIM Note: maturase Location: 1 301 304-1 301 508 bp Feature: gene Location: 1303166-1303717 bp Ori: KNY25918.1 Feature: domain Description: yflN-like_MBL-fold Location: 1303223-1303676 bp Feature: domain Description: yflN-like_MBL-fold Location: 1 303223-1 303676 bp Feature: gene Location: 1304089-1304517 bp Feature: gene Location: 3368373-3368951 bp Ori: KNY27582.1 Feature: domain Description: DUF820 Location: 3368439-3368919 bp Feature: domain Description: DUF820 Location: 3368439-336891 9 bp Feature: gene Location: 3369144-3369854 bp Ori: KNY27583.1 Feature: domain Description: DUF4830 Location: 3369147-3369297 bp Feature: domain Description: DUF4830 Location: 33691 47-3369297 bp Feature: domain Description: DUF4829 Location: 3369450-3369837 bp Feature: domain Description: DUF4829 Location: 3369450-3369837 bp Feature: gene Location: 3369949-3370437 bp Ori: KNY27584.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3369967-3370090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3369967-3370090 bp Feature: domain Description: GIIM Note: maturase Location: 3370201-3370402 bp Feature: domain Description: GIIM Note: maturase Location: 3370201 -3370402 bp Feature: gene Location: 3370525-3371298 bp Ori: KNY27585.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3370819-3371290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337081 9-3371 290 bp Feature: gene Location: 3372089-3372694 bp Ori: KNY27586.1 Feature: domain Description: DUF3221 Location: 3372284-3372497 bp Feature: domain Description: DUF3221 Location: 3372284-3372497 bp Feature: gene Location: 3373088-3373750 bp Feature: gene Location: 3745651-3745977 bp Feature: gene Location: 3746095-3746220 bp Feature: gene Location: 3746462-3748114 bp Ori: KNY27908.1 Feature: domain Description: RVT_N Location: 3746507-3746750 bp Feature: domain Description: RVT_N Location: 3746507-3746750 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3746795-3747443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3746795-3747443 bp Feature: domain Description: GIIM Note: maturase Location: 3747497-3747731 bp Feature: domain Description: GIIM Note: maturase Location: 3747497-3747731 bp Feature: gene Location: 3748858-3749607 bp Ori: KNY27909.1 Feature: domain Description: DUF2310 Location: 3748861-3749599 bp Feature: domain Description: DUF231 0 Location: 3748861 -3749599 bp Feature: gene Location: 3750055-3751233 bp Ori: KNY27910.1 Feature: domain Description: Zn_Tnp_IS91 Location: 3750127-3750394 bp Feature: domain Description: Zn_Tnp_IS91 Location: 37501 27-3750394 bp Feature: domain Description: Y2_Tnp Location: 3750514-3751054 bp Feature: domain Description: Y2_Tnp Location: 375051 4-3751 054 bp Feature: domain Description: Zn-ribbon Location: 3751141-3751225 bp Feature: domain Description: Zn-ribbon Location: 3751 1 41 -3751 225 bp Feature: gene Location: 3776715-3777059 bp Ori: KNY27933.1 Feature: domain Description: YAcAr Location: 3776718-3776901 bp Feature: domain Description: YAcAr Location: 377671 8-3776901 bp Feature: gene Location: 3777327-3778493 bp Ori: KNY27934.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 3777363-3777834 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 3777363-3777834 bp Feature: domain Description: Transposase_20 Location: 3778158-3778377 bp Feature: domain Description: Transposase_20 Location: 37781 58-3778377 bp Feature: gene Location: 3779006-3780823 bp Ori: KNY27935.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3779273-3780068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3779273-3780068 bp Feature: domain Description: Intron_maturas2 Location: 3780170-3780461 bp Feature: domain Description: Intron_maturas2 Location: 37801 70-3780461 bp Feature: domain Description: HNHc Note: nucleases Location: 3780608-3780806 bp Feature: domain Description: HNHc Note: nucleases Location: 3780608-3780806 bp Feature: gene Location: 3781129-3781908 bp Feature: gene Location: 3782069-3782536 bp Feature: gene Location: 4053375-4053782 bp Ori: KNY28172.1 Feature: domain Description: DDE_Tnp_IS66 Location: 4053441-4053771 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4053441 -4053771 bp Feature: gene Location: 4053727-4054383 bp Ori: KNY28173.1 Feature: domain Description: DDE_Tnp_IS66 Location: 4053778-4054264 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4053778-4054264 bp Feature: gene Location: 4054700-4056238 bp Ori: KNY28174.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4055333-4055996 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4055333-4055996 bp Feature: gene Location: 4056235-4057980 bp Feature: gene Location: 4057970-4061320 bp Ori: KNY28176.1 Feature: domain Description: TerD Location: 4057973-4058492 bp Feature: domain Description: TerD Location: 4057973-4058492 bp Feature: gene Location: 5999141-5999803 bp Feature: gene Location: 6000104-6000739 bp Ori: KNY29868.1 Feature: domain Description: KOG4768 Location: 6000131-6000731 bp Feature: domain Description: KOG4768 Location: 60001 31 -6000731 bp Feature: gene Location: 6000694-6001023 bp Ori: KNY29869.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6000742-6000988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6000742-6000988 bp Feature: gene Location: 6001096-6001311 bp Feature: gene Location: 6001345-6001866 bp Ori: KNY29871.1 Feature: domain Description: INT_RitA_C_like Location: 6001681-6001852 bp Feature: domain Description: INT_RitA_C_like Location: 6001 681 -6001 852 bp Feature: gene Location: 6256509-6257945 bp Ori: KNY30078.1 Feature: domain Description: zf-IS66 Location: 6256821-6256953 bp Feature: domain Description: zf-IS66 Location: 6256821 -6256953 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6257001-6257826 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6257001 -6257826 bp Feature: gene Location: 6258312-6258725 bp Feature: gene Location: 6259130-6260947 bp Ori: KNY30080.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6259397-6260192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6259397-62601 92 bp Feature: domain Description: Intron_maturas2 Location: 6260294-6260582 bp Feature: domain Description: Intron_maturas2 Location: 6260294-6260582 bp Feature: gene Location: 6261626-6263443 bp Ori: KNY30081.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6261893-6262688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6261 893-6262688 bp Feature: domain Description: Intron_maturas2 Location: 6262790-6263081 bp Feature: domain Description: Intron_maturas2 Location: 6262790-6263081 bp Feature: domain Description: HNHc Note: nucleases Location: 6263228-6263426 bp Feature: domain Description: HNHc Note: nucleases Location: 6263228-6263426 bp Feature: gene Location: 6263956-6264324 bp Ori: KNY30082.1 Feature: domain Description: Transposase_20 Location: 6263989-6264217 bp Feature: domain Description: Transposase_20 Location: 6263989-626421 7 bp Feature: gene Location: 6264412-6265122 bp Ori: KNY30083.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 6264448-6264910 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 6264448-626491 0 bp Feature: gene Location: 6456703-6458334 bp Ori: KNY30248.1 Feature: domain Description: LZ_Tnp_IS66 Location: 6456823-6457036 bp Feature: domain Description: LZ_Tnp_IS66 Location: 6456823-6457036 bp Feature: domain Description: zf-IS66 Location: 6457060-6457192 bp Feature: domain Description: zf-IS66 Location: 6457060-64571 92 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6457255-6458107 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6457255-64581 07 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 6458128-6458248 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 64581 28-6458248 bp Feature: gene Location: 6458331-6458606 bp Feature: gene Location: 6459530-6461347 bp Ori: KNY30250.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6459797-6460592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6459797-6460592 bp Feature: domain Description: Intron_maturas2 Location: 6460694-6460982 bp Feature: domain Description: Intron_maturas2 Location: 6460694-6460982 bp Feature: domain Description: HNHc Note: nucleases Location: 6461132-6461330 bp Feature: domain Description: HNHc Note: nucleases Location: 6461 1 32-6461 330 bp Feature: gene Location: 6461860-6463026 bp Ori: KNY30251.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 6461896-6462367 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 6461 896-6462367 bp Feature: domain Description: Transposase_20 Location: 6462691-6462913 bp Feature: domain Description: Transposase_20 Location: 6462691 -646291 3 bp Feature: gene Location: 6463238-6463738 bp Feature: gene Location: 6463735-6465102 bp Ori: KNY30253.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6464029-6464740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6464029-6464740 bp Feature: gene Location: 6466201-6466419 bp Feature: gene Location: 6466610-6466780 bp Ori: KNY30255.1 Feature: domain Description: SymE_toxin Location: 6466646-6466757 bp Feature: domain Description: SymE_toxin Location: 6466646-6466757 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR (smart00028), RVT-GII, GIIM (pfam08388), yflN-like_MBL-fold (cd07721), DUF820, DUF4830 (pfam16112), DUF4829 (pfam16111), DUF3221 (pfam11518), RVT_N (pfam13655), DUF2310 (pfam10071)
Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986), Zn-ribbon (cl02609), YAcAr, DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371), Intron_maturas2 (pfam01348), HNHc (smart00507), DDE_Tnp_IS66 (pfam03050), RVT-Retrons
TerD (pfam02342), KOG4768 (KOG4768, Mitochondrial mRNA maturase ), INT_RitA_C_like (cd01188), zf-IS66 (pfam13005), LZ_Tnp_IS66 (pfam13007), DDE_Tnp_IS66_C (pfam13817), SymE_toxin (pfam08845)