myRT

myRT report for GCA_001264195.1_ASM126419v1

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Seq: LFZI01000010.1 Escherichia coli strain FE95160 scf7180000000109, whole genome shotgun sequence (122115 bp)
Overview 1 RT 1: 11165-15901 bp Neighborhood of RT #1 [11165, 15901] RVT-Retrons Feature: gene Location: 11165-11368 bp Feature: gene Location: 12706-12945 bp Feature: gene Location: 13713-14648 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13824-14409 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 3824-1 4409 bp Feature: gene Location: 14648-15610 bp Feature: gene Location: 15674-15901 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: LFZI01000019.1 Escherichia coli strain FE95160 scf7180000000118, whole genome shotgun sequence (707743 bp)
Overview 1 RT 1: 45001-51300 bp 2 RT 2: 591079-598105 bp Neighborhood of RT #1 [45001, 51300] DUF3304 DUF2235 DUF2235 RVT-GII GIIM YhhI Neighborhood of RT #2 [591079, 598107] VgrG Pyocin_S HNHc Col_Im_like RVT-GII GIIM YhhI PRK10167 Feature: gene Location: 45001-45558 bp Feature: domain Description: DUF3304 Location: 45139-45469 bp Feature: domain Description: DUF3304 Location: 45139-45469 bp Feature: gene Location: 45543-47642 bp Feature: domain Description: DUF2235 Location: 45744-46254 bp Feature: domain Description: DUF2 2 35 Location: 45744-462 54 bp Feature: domain Description: DUF2235 Location: 46290-46650 bp Feature: domain Description: DUF2 2 35 Location: 462 90-46650 bp Feature: gene Location: 48276-49598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48552-49209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48552 -492 09 bp Feature: domain Description: GIIM Note: maturase Location: 49299-49506 bp Feature: domain Description: GIIM Note: maturase Location: 492 99-49506 bp Feature: gene Location: 50275-50484 bp Feature: domain Description: YhhI Location: 50299-50482 bp Feature: domain Description: YhhI Location: 502 99-50482 bp Feature: gene Location: 50797-51300 bp Feature: gene Location: 591079-594534 bp Feature: domain Description: VgrG Location: 591091-592744 bp Feature: domain Description: VgrG Location: 591091-592 744 bp Feature: domain Description: Pyocin_S Location: 593710-594130 bp Feature: domain Description: Pyocin_S Location: 593710-594130 bp Feature: domain Description: HNHc Note: nucleases Location: 594289-594529 bp Feature: domain Description: HNHc Note: nucleases Location: 5942 89-59452 9 bp Feature: gene Location: 594549-594821 bp Feature: domain Description: Col_Im_like Location: 594561-594816 bp Feature: domain Description: Col_Im_like Location: 594561-594816 bp Feature: gene Location: 595406-596728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 595682-596339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 595682 -596339 bp Feature: domain Description: GIIM Note: maturase Location: 596429-596636 bp Feature: domain Description: GIIM Note: maturase Location: 59642 9-596636 bp Feature: gene Location: 597028-597480 bp Feature: domain Description: YhhI Location: 597034-597142 bp Feature: domain Description: YhhI Location: 597034-597142 bp Feature: gene Location: 597598-598107 bp Feature: domain Description: PRK10167 Location: 597601-598105 bp Feature: domain Description: PRK10167 Location: 597601-598105 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3304 (pfam11745), DUF2235 (pfam09994), RVT-GII, GIIM (pfam08388), YhhI (COG5433), VgrG (COG3501), Pyocin_S (pfam06958), HNHc (smart00507), Col_Im_like (cl03164), PRK10167 (hypothetical protein; Provisional)

Seq: LFZI01000022.1 Escherichia coli strain FE95160 scf7180000000121, whole genome shotgun sequence (744683 bp)
Overview 1 RT 1: 78538-82968 bp 2 RT 2: 158955-163203 bp 3 RT 3: 648450-652587 bp Neighborhood of RT #1 [78538, 82985] RVT-GII GIIM YhhI YhhI YhhI IS285 Neighborhood of RT #2 [158955, 163203] DUF45 RVT-GII GIIM Neighborhood of RT #3 [648450, 652592] PRK11018 PRK09951 RVT-GII GIIM InsQ OrfB_Zn_ribbon RAYT Feature: gene Location: 78538-78927 bp Feature: gene Location: 79042-79347 bp Feature: gene Location: 79910-81232 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80186-80843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80186-80843 bp Feature: domain Description: GIIM Note: maturase Location: 80933-81125 bp Feature: domain Description: GIIM Note: maturase Location: 8093 3 -81125 bp Feature: gene Location: 81439-82575 bp Feature: domain Description: YhhI Location: 81442-81805 bp Feature: domain Description: YhhI Location: 81442-81805 bp Feature: domain Description: YhhI Location: 81862-82216 bp Feature: domain Description: YhhI Location: 81862-82216 bp Feature: domain Description: YhhI Location: 82234-82483 bp Feature: domain Description: YhhI Location: 8223 4-82483 bp Feature: gene Location: 82590-82985 bp Feature: domain Description: IS285 Location: 82596-82968 bp Feature: domain Description: IS285 Location: 82596-82968 bp Feature: gene Location: 158955-159710 bp Feature: domain Description: DUF45 Location: 159057-159678 bp Feature: domain Description: DUF45 Location: 159057-159678 bp Feature: gene Location: 160019-160369 bp Feature: gene Location: 160976-162484 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 161234-161966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16123 4-161966 bp Feature: domain Description: GIIM Note: maturase Location: 162041-162239 bp Feature: domain Description: GIIM Note: maturase Location: 162041-16223 9 bp Feature: gene Location: 162453-162878 bp Feature: gene Location: 162793-163203 bp Feature: gene Location: 648450-648683 bp Feature: domain Description: PRK11018 Location: 648453-648681 bp Feature: domain Description: PRK11018 Location: 648453 -648681 bp Feature: gene Location: 648792-649463 bp Feature: domain Description: PRK09951 Location: 648795-649458 bp Feature: domain Description: PRK09951 Location: 648795-649458 bp Feature: gene Location: 649548-650918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 649884-650496 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 649884-650496 bp Feature: domain Description: GIIM Note: maturase Location: 650556-650760 bp Feature: domain Description: GIIM Note: maturase Location: 650556-650760 bp Feature: gene Location: 651335-652093 bp Feature: domain Description: InsQ Location: 651344-651731 bp Feature: domain Description: InsQ Location: 6513 44-65173 1 bp Feature: domain Description: OrfB_Zn_ribbon Location: 651797-651998 bp Feature: domain Description: OrfB_Zn_ribbon Location: 651797-651998 bp Feature: gene Location: 652161-652592 bp Feature: domain Description: RAYT Location: 652194-652587 bp Feature: domain Description: RAYT Location: 652194-652587 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YhhI (COG5433), IS285 (COG3328), DUF45 (pfam01863), PRK11018 (putative sulfurtransferase YedF), PRK09951 (hypothetical protein; Provisional), InsQ (COG0675), OrfB_Zn_ribbon (pfam07282), RAYT (COG1943)