myRT

myRT report for GCA_001264395.1_CFSAN033090

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Seq: LGYX01000014.1 Pantoea sp. CFSAN033090 contig_14, whole genome shotgun sequence (117032 bp)
Overview 1 RT 1: 40002-47649 bp Neighborhood of RT #1 [40002, 47651] COG3378 RVT-UG5 nitrilase SmpB PRK10724 Feature: gene Location: 40002-40265 bp Ori: KOA69794.1 Feature: domain Description: COG3378 Location: 40014-40260 bp Feature: domain Description: COG3378 Location: 4001 4-40260 bp Feature: gene Location: 41227-41925 bp Feature: gene Location: 41918-44791 bp Ori: KOA69796.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 42392-42929 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 42392-42929 bp Feature: domain Description: nitrilase Location: 44075-44708 bp Feature: domain Description: nitrilase Location: 44075-44708 bp Feature: gene Location: 46576-47058 bp Ori: KOA69797.1 Gene: smpB Feature: domain Description: SmpB Location: 46606-47053 bp Feature: domain Description: SmpB Location: 46606-47053 bp Feature: gene Location: 47217-47651 bp Ori: KOA69798.1 Feature: domain Description: PRK10724 Location: 47220-47649 bp Feature: domain Description: PRK1 0724 Location: 47220-47649 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3378 (Phage- or plasmid-associated DNA primase ), RVT-UG5, nitrilase (cl11424), SmpB (pfam01668), PRK10724 (type II toxin-antitoxin system RatA family toxin)

Seq: LGYX01000010.1 Pantoea sp. CFSAN033090 contig_10, whole genome shotgun sequence (96758 bp)
Overview 1 RT 1: 87-3110 bp Neighborhood of RT #1 [87, 3322] RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 87-1022 bp Ori: KOA70355.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 189-783 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 189-783 bp Feature: gene Location: 1019-2644 bp Ori: KOA70280.1 Feature: domain Description: COG3950 Location: 1163-2624 bp Feature: domain Description: COG3950 Location: 1163-2 62 4 bp Feature: gene Location: 2654-3322 bp Ori: KOA70281.1 Feature: domain Description: TIGR02646 Location: 2720-3110 bp Feature: domain Description: TIGR02 646 Location: 2 72 0-3110 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)