myRT

myRT report for GCA_001265165.1_ASM126516v1

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Seq: JHQV01000016.1 Escherichia coli strain 100290 100290_16, whole genome shotgun sequence (87685 bp)
Overview 1 RT 1: 68373-72252 bp Neighborhood of RT #1 [68373, 72257] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 68373-68831 bp Feature: domain Description: dut Location: 68379-68826 bp Feature: domain Description: dut Location: 68379-68826 bp Feature: gene Location: 68938-69534 bp Feature: domain Description: slmA Location: 68944-69520 bp Feature: domain Description: slmA Location: 68944-69520 bp Feature: gene Location: 69578-70537 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 69713-70262 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6971 3-70262 bp Feature: gene Location: 70834-71490 bp Feature: domain Description: pyrE Location: 70852-71485 bp Feature: domain Description: pyrE Location: 70852-71 485 bp Feature: gene Location: 71541-72257 bp Feature: domain Description: rph Location: 71544-72252 bp Feature: domain Description: rph Location: 71 544-72252 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: JHQV01000004.1 Escherichia coli strain 100290 100290_4, whole genome shotgun sequence (345802 bp)
Overview 1 RT 1: 336930-342966 bp Neighborhood of RT #1 [336930, 342983] PRK09692 RVT-UG5 nitrilase Psu Feature: gene Location: 336930-337154 bp Feature: gene Location: 337299-338555 bp Feature: domain Description: PRK09692 Location: 337308-338511 bp Feature: domain Description: PRK09692 Location: 337308-338511 bp Feature: gene Location: 338647-341523 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 339121-339649 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 33912 1-339649 bp Feature: domain Description: nitrilase Location: 340861-341443 bp Feature: domain Description: nitrilase Location: 340861-341443 bp Feature: gene Location: 341520-342209 bp Feature: gene Location: 342411-342983 bp Feature: domain Description: Psu Location: 342429-342966 bp Feature: domain Description: Psu Location: 342 42 9-342 966 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-UG5, nitrilase (cl11424), Psu (pfam07455)

Seq: JHQV01000040.1 Escherichia coli strain 100290 100290_40, whole genome shotgun sequence (39165 bp)
Overview 1 RT 1: 24747-30677 bp Neighborhood of RT #1 [24747, 30862] AAA_23 Smc RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 24747-26573 bp Feature: domain Description: AAA_23 Location: 24801-25536 bp Feature: domain Description: AAA_23 Location: 24801-2553 6 bp Feature: domain Description: Smc Location: 25782-26073 bp Feature: domain Description: Smc Location: 25782-26073 bp Feature: gene Location: 26741-27202 bp Feature: gene Location: 27625-28560 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 27727-28327 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 27727-283 27 bp Feature: gene Location: 28557-30209 bp Feature: domain Description: COG3950 Location: 28755-30171 bp Feature: domain Description: COG3 950 Location: 28755-3 0171 bp Feature: gene Location: 30212-30862 bp Feature: domain Description: TIGR02646 Location: 30278-30677 bp Feature: domain Description: TIGR02646 Location: 3 0278-3 0677 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_23 (pfam13476), Smc (COG1196), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)