myRT

myRT report for GCA_001265355.1_302048

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Seq: JHRF01000015.1 Escherichia coli strain 302048 302048_15, whole genome shotgun sequence (36530 bp)
Overview 1 RT 1: 25310-31240 bp Neighborhood of RT #1 [25310, 31425] AAA_23 Smc RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 25310-27136 bp Feature: domain Description: AAA_23 Location: 25364-26099 bp Feature: domain Description: AAA_23 Location: 25364-26099 bp Feature: domain Description: Smc Location: 26345-26636 bp Feature: domain Description: Smc Location: 26345-26636 bp Feature: gene Location: 27304-27765 bp Feature: gene Location: 28188-29123 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 28290-28890 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 28290-28890 bp Feature: gene Location: 29120-30772 bp Feature: domain Description: COG3950 Location: 29318-30734 bp Feature: domain Description: COG3950 Location: 2931 8-30734 bp Feature: gene Location: 30775-31425 bp Feature: domain Description: TIGR02646 Location: 30841-31240 bp Feature: domain Description: TIGR02646 Location: 30841 -31 240 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_23 (pfam13476), Smc (COG1196), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)

Seq: JHRF01000003.1 Escherichia coli strain 302048 302048_3, whole genome shotgun sequence (59613 bp)
Overview 1 RT 1: 50764-54643 bp Neighborhood of RT #1 [50764, 54648] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 50764-51222 bp Feature: domain Description: dut Location: 50770-51217 bp Feature: domain Description: dut Location: 50770-512 17 bp Feature: gene Location: 51329-51925 bp Feature: domain Description: slmA Location: 51335-51911 bp Feature: domain Description: slmA Location: 51335-51911 bp Feature: gene Location: 51969-52928 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 52104-52653 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 52 104-52 653 bp Feature: gene Location: 53225-53881 bp Feature: domain Description: pyrE Location: 53243-53876 bp Feature: domain Description: pyrE Location: 532 43-53876 bp Feature: gene Location: 53932-54648 bp Feature: domain Description: rph Location: 53935-54643 bp Feature: domain Description: rph Location: 53935-54643 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: JHRF01000081.1 Escherichia coli strain 302048 302048_81, whole genome shotgun sequence (25653 bp)
Overview 1 RT 1: 2881-8309 bp Neighborhood of RT #1 [2881, 8309] RVT-UG5 nitrilase PRK09692 Feature: gene Location: 2881-3024 bp Feature: gene Location: 3030-3719 bp Feature: gene Location: 3716-6592 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4190-4718 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4190-4718 bp Feature: domain Description: nitrilase Location: 5930-6512 bp Feature: domain Description: nitrilase Location: 593 0-6512 bp Feature: gene Location: 6684-7940 bp Feature: domain Description: PRK09692 Location: 6693-7896 bp Feature: domain Description: PRK09692 Location: 6693 -7896 bp Feature: gene Location: 8085-8309 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, nitrilase (cl11424), PRK09692 (Integrase; provisional)