myRT

myRT report for GCA_001265675.1_102598

Download annotations/find similar RTs

Seq: JHRW01000013.1 Escherichia coli strain 102598 102598_13, whole genome shotgun sequence (87119 bp)
Overview 1 RT 1: 14864-18743 bp Neighborhood of RT #1 [14864, 18748] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 14864-15580 bp Feature: domain Description: rph Location: 14867-15575 bp Feature: domain Description: rph Location: 1 4867-1 5575 bp Feature: gene Location: 15631-16287 bp Feature: domain Description: pyrE Location: 15649-16282 bp Feature: domain Description: pyrE Location: 1 5649-1 6282 bp Feature: gene Location: 16584-17543 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 16719-17268 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 671 9-1 7268 bp Feature: gene Location: 17587-18183 bp Feature: domain Description: slmA Location: 17593-18169 bp Feature: domain Description: slmA Location: 1 7593-1 81 69 bp Feature: gene Location: 18290-18748 bp Feature: domain Description: dut Location: 18296-18743 bp Feature: domain Description: dut Location: 1 8296-1 8743 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: JHRW01000018.1 Escherichia coli strain 102598 102598_18, whole genome shotgun sequence (121618 bp)
Overview 1 RT 1: 24744-30674 bp Neighborhood of RT #1 [24744, 30859] AAA_23 Smc RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 24744-26570 bp Feature: domain Description: AAA_23 Location: 24798-25533 bp Feature: domain Description: AAA_2 3 Location: 2 4798-2 5533 bp Feature: domain Description: Smc Location: 25779-26070 bp Feature: domain Description: Smc Location: 2 5779-2 6070 bp Feature: gene Location: 26738-27199 bp Feature: gene Location: 27622-28557 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 27724-28324 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 772 4-2 832 4 bp Feature: gene Location: 28554-30206 bp Feature: domain Description: COG3950 Location: 28752-30168 bp Feature: domain Description: COG3950 Location: 2 8752 -30168 bp Feature: gene Location: 30209-30859 bp Feature: domain Description: TIGR02646 Location: 30275-30674 bp Feature: domain Description: TIGR02 646 Location: 302 75-30674 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_23 (pfam13476), Smc (COG1196), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)

Seq: JHRW01000004.1 Escherichia coli strain 102598 102598_4, whole genome shotgun sequence (283030 bp)
Overview 1 RT 1: 274158-280194 bp Neighborhood of RT #1 [274158, 280211] PRK09692 RVT-UG5 nitrilase Psu Feature: gene Location: 274158-274382 bp Feature: gene Location: 274527-275783 bp Feature: domain Description: PRK09692 Location: 274536-275739 bp Feature: domain Description: PRK09692 Location: 27453 6-27573 9 bp Feature: gene Location: 275875-278751 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 276349-276877 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2763 49-276877 bp Feature: domain Description: nitrilase Location: 278089-278671 bp Feature: domain Description: nitrilase Location: 278089-278671 bp Feature: gene Location: 278748-279437 bp Feature: gene Location: 279639-280211 bp Feature: domain Description: Psu Location: 279657-280194 bp Feature: domain Description: Psu Location: 279657-280194 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-UG5, nitrilase (cl11424), Psu (pfam07455)