myRT

myRT report for GCA_001266095.1_102132

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Seq: JHSS01000012.1 Escherichia coli strain 102132 102132_12, whole genome shotgun sequence (299965 bp)
Overview 1 RT 1: 2680-6998 bp Neighborhood of RT #1 [2680, 7015] Psu RVT-UG17 SLATT_5 PRK09692 Feature: gene Location: 2680-3252 bp Feature: domain Description: Psu Location: 2698-3235 bp Feature: domain Description: Psu Location: 2698-3235 bp Feature: gene Location: 3305-3454 bp Feature: gene Location: 3575-4984 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 3812-4424 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 381 2-4424 bp Feature: gene Location: 5083-5820 bp Feature: domain Description: SLATT_5 Location: 5182-5788 bp Feature: domain Description: SLATT_5 Location: 51 82-5788 bp Feature: gene Location: 5837-7015 bp Feature: domain Description: PRK09692 Location: 5846-6998 bp Feature: domain Description: PRK09692 Location: 5846-6998 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Psu (pfam07455), RVT-UG17, SLATT_5 (pfam18160), PRK09692 (Integrase; provisional)

Seq: JHSS01000008.1 Escherichia coli strain 102132 102132_8, whole genome shotgun sequence (177490 bp)
Overview 1 RT 1: 1-3170 bp Neighborhood of RT #1 [1, 3170] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 1-165 bp Feature: domain Description: PHA02517 Location: 4-100 bp Feature: domain Description: PHA02 517 Location: 4-100 bp Feature: gene Location: 757-2280 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1030-1762 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1030-1762 bp Feature: domain Description: GIIM Note: maturase Location: 1837-2035 bp Feature: domain Description: GIIM Note: maturase Location: 1837-2 035 bp Feature: gene Location: 2457-2843 bp Feature: domain Description: PHA02517 Location: 2460-2841 bp Feature: domain Description: PHA02 517 Location: 2 460-2 841 bp Feature: gene Location: 3039-3170 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)