myRT

myRT report for GCA_001266335.1_400929

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Seq: JHTE01000100.1 Escherichia coli strain 400929 400929_100, whole genome shotgun sequence (9092 bp)
Overview 1 RT 1: 3379-7397 bp Neighborhood of RT #1 [3379, 7402] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 3379-3693 bp Feature: gene Location: 3759-3899 bp Feature: gene Location: 4577-6478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4844-5675 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4844-5675 bp Feature: domain Description: Intron_maturas2 Location: 5789-6047 bp Feature: domain Description: Intron_maturas2 Location: 5789-6047 bp Feature: domain Description: HNHc Note: nucleases Location: 6221-6383 bp Feature: domain Description: HNHc Note: nucleases Location: 6221 -6383 bp Feature: gene Location: 6673-7113 bp Feature: domain Description: PRK13732 Location: 6679-7111 bp Feature: domain Description: PRK1 3732 Location: 6679-71 1 1 bp Feature: gene Location: 7169-7402 bp Feature: domain Description: DUF905 Location: 7199-7397 bp Feature: domain Description: DUF905 Location: 71 99-7397 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: JHTE01000016.1 Escherichia coli strain 400929 400929_16, whole genome shotgun sequence (121747 bp)
Overview 1 RT 1: 24748-30678 bp Neighborhood of RT #1 [24748, 30863] AAA_23 SMC_prok_A RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 24748-26574 bp Feature: domain Description: AAA_23 Location: 24802-25537 bp Feature: domain Description: AAA_2 3 Location: 2 4802 -2 5537 bp Feature: domain Description: SMC_prok_A Location: 25780-26098 bp Feature: domain Description: SMC_prok_A Location: 2 5780-2 6098 bp Feature: gene Location: 26742-27203 bp Feature: gene Location: 27626-28561 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 27728-28328 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 772 8-2 832 8 bp Feature: gene Location: 28558-30210 bp Feature: domain Description: COG3950 Location: 28756-30172 bp Feature: domain Description: COG3950 Location: 2 8756-30172 bp Feature: gene Location: 30213-30863 bp Feature: domain Description: TIGR02646 Location: 30279-30678 bp Feature: domain Description: TIGR02 646 Location: 302 79-30678 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_23 (pfam13476), SMC_prok_A (TIGR02169), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)

Seq: JHTE01000017.1 Escherichia coli strain 400929 400929_17, whole genome shotgun sequence (73529 bp)
Overview 1 RT 1: 54217-58096 bp Neighborhood of RT #1 [54217, 58101] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 54217-54675 bp Feature: domain Description: dut Location: 54223-54670 bp Feature: domain Description: dut Location: 54223 -54670 bp Feature: gene Location: 54782-55378 bp Feature: domain Description: slmA Location: 54788-55364 bp Feature: domain Description: slmA Location: 54788-553 64 bp Feature: gene Location: 55422-56381 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 55557-56106 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 55557-56106 bp Feature: gene Location: 56678-57334 bp Feature: domain Description: pyrE Location: 56696-57329 bp Feature: domain Description: pyrE Location: 56696-573 29 bp Feature: gene Location: 57385-58101 bp Feature: domain Description: rph Location: 57388-58096 bp Feature: domain Description: rph Location: 573 88-58096 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: JHTE01000031.1 Escherichia coli strain 400929 400929_31, whole genome shotgun sequence (48876 bp)
Overview 1 RT 1: 2956-8384 bp Neighborhood of RT #1 [2956, 8384] RVT-UG5 nitrilase PRK09692 Feature: gene Location: 2956-3099 bp Feature: gene Location: 3105-3794 bp Feature: gene Location: 3791-6667 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4265-4793 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4 265-4 793 bp Feature: domain Description: nitrilase Location: 6005-6587 bp Feature: domain Description: nitrilase Location: 6005-6587 bp Feature: gene Location: 6759-8015 bp Feature: domain Description: PRK09692 Location: 6768-7971 bp Feature: domain Description: PRK09692 Location: 6768-7971 bp Feature: gene Location: 8160-8384 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, nitrilase (cl11424), PRK09692 (Integrase; provisional)