myRT

myRT report for GCA_001267655.1_ASM126765v1

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Seq: LFWI01000009.1 Vibrio parahaemolyticus strain RM-17-6 contig9, whole genome shotgun sequence (245601 bp)
Overview 1 RT 1: 149324-155545 bp Neighborhood of RT #1 [149324, 155658] SmpB PRK09692 RVT-Retrons RbsK RCL Feature: gene Location: 149324-149809 bp Ori: KOE15551.1 Feature: domain Description: SmpB Location: 149354-149801 bp Feature: domain Description: SmpB Location: 1 49354-1 49801 bp Feature: gene Location: 150410-151657 bp Ori: KOE15552.1 Feature: domain Description: PRK09692 Location: 150413-151646 bp Feature: domain Description: PRK09692 Location: 1 5041 3-1 51 646 bp Feature: gene Location: 151714-152679 bp Ori: KOE15553.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 151819-152395 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 51 81 9-1 52395 bp Feature: gene Location: 152681-153682 bp Feature: gene Location: 154417-155658 bp Ori: KOE15555.1 Feature: domain Description: RbsK Location: 154864-155185 bp Feature: domain Description: RbsK Location: 1 54864-1 551 85 bp Feature: domain Description: RCL Location: 155269-155545 bp Feature: domain Description: RCL Location: 1 55269-1 55545 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SmpB (pfam01668), PRK09692 (Integrase; provisional), RVT-Retrons, RbsK (COG0524), RCL (COG3613)

Seq: LFWI01000005.1 Vibrio parahaemolyticus strain RM-17-6 contig5, whole genome shotgun sequence (554786 bp)
Overview 1 RT 1: 485866-491299 bp Neighborhood of RT #1 [485866, 491763] Lgt thym_sym thyA RVT-Retrons HNH_5 Feature: gene Location: 485866-486687 bp Ori: KOE19658.1 Feature: domain Description: Lgt Location: 485869-486661 bp Feature: domain Description: Lgt Location: 485869-486661 bp Feature: gene Location: 487272-488066 bp Ori: KOE19659.1 Feature: domain Description: thym_sym Location: 487281-487533 bp Feature: domain Description: thym_sym Location: 4872 81-487533 bp Feature: domain Description: thyA Location: 487599-488064 bp Feature: domain Description: thyA Location: 487599-488064 bp Feature: gene Location: 488480-489421 bp Ori: KOE19660.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 488582-489179 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 488582 -489179 bp Feature: gene Location: 489424-490383 bp Feature: gene Location: 490999-491763 bp Ori: KOE19661.1 Feature: domain Description: HNH_5 Location: 491101-491299 bp Feature: domain Description: HNH_5 Location: 491101-4912 99 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Lgt (COG0682), thym_sym (TIGR03284), thyA (PRK13821), RVT-Retrons, HNH_5 (pfam14279)