myRT

myRT report for GCA_001267965.1_ASM126796v1

Download annotations/find similar RTs

Seq: LFWO01000034.1 Vibrio parahaemolyticus strain RM-13-3 contig34, whole genome shotgun sequence (524878 bp)
Overview 1 RT 1: 324304-333303 bp Neighborhood of RT #1 [324304, 333303] TniQ TnsD TnsD TnsE_C RVT-UG1 Feature: gene Location: 324304-325842 bp Ori: KOE83434.1 Feature: domain Description: TniQ Location: 324319-324784 bp Feature: domain Description: TniQ Location: 32431 9-324784 bp Feature: domain Description: TnsD Location: 324907-325204 bp Feature: domain Description: TnsD Location: 324907-325204 bp Feature: domain Description: TnsD Location: 325276-325636 bp Feature: domain Description: TnsD Location: 325276-325636 bp Feature: gene Location: 325970-327409 bp Ori: KOE83435.1 Feature: domain Description: TnsE_C Location: 326924-327302 bp Feature: domain Description: TnsE_C Location: 326924-327302 bp Feature: gene Location: 327681-331358 bp Ori: KOE83436.1 Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 328293-328746 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 328293-328746 bp Feature: gene Location: 331367-331807 bp Feature: gene Location: 331960-333303 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TniQ (pfam06527), TnsD (pfam15978), TnsE_C (pfam18623), RVT-UG1

Seq: LFWO01000033.1 Vibrio parahaemolyticus strain RM-13-3 contig33, whole genome shotgun sequence (198934 bp)
Overview 1 RT 1: 67300-73372 bp Neighborhood of RT #1 [67300, 73446] RVT-Retrons ComA-like_MBL-fold Prok-E2_A ThiF Prok-JAB Feature: gene Location: 67300-67485 bp Feature: gene Location: 67506-67760 bp Feature: gene Location: 68307-70067 bp Ori: KOE83690.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 68463-69084 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 68463-69084 bp Feature: gene Location: 70119-71240 bp Ori: KOE83691.1 Feature: domain Description: ComA-like_MBL-fold Location: 70131-70359 bp Feature: domain Description: ComA-like_MBL-fold Location: 70131-70359 bp Feature: gene Location: 71224-73446 bp Ori: KOE83692.1 Feature: domain Description: Prok-E2_A Location: 71254-71710 bp Feature: domain Description: Prok-E2 _A Location: 712 54-71710 bp Feature: domain Description: ThiF Location: 72268-72625 bp Feature: domain Description: ThiF Location: 72 2 68-72 62 5 bp Feature: domain Description: Prok-JAB Location: 73012-73372 bp Feature: domain Description: Prok-JAB Location: 73012 -73372 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, ComA-like_MBL-fold (cd07731), Prok-E2_A (pfam14457), ThiF (pfam00899), Prok-JAB (pfam14464)

Seq: LFWO01000028.1 Vibrio parahaemolyticus strain RM-13-3 contig28, whole genome shotgun sequence (427514 bp)
Overview 1 RT 1: 382234-386335 bp Neighborhood of RT #1 [382234, 386335] RVT_N RVT-GII GIIM PRK10354 Feature: gene Location: 382234-382809 bp Feature: gene Location: 382961-383182 bp Feature: gene Location: 383380-384756 bp Ori: KOE87992.1 Feature: domain Description: RVT_N Location: 383383-383575 bp Feature: domain Description: RVT_N Location: 3 83 3 83 -3 83 575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 383620-384247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 83 620-3 84247 bp Feature: domain Description: GIIM Note: maturase Location: 384307-384532 bp Feature: domain Description: GIIM Note: maturase Location: 3 843 07-3 8453 2 bp Feature: gene Location: 385759-385971 bp Ori: KOE87993.1 Feature: domain Description: PRK10354 Location: 385762-385963 bp Feature: domain Description: PRK103 54 Location: 3 85762-3 85963 bp Feature: gene Location: 386135-386335 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PRK10354 (RNA chaperone/antiterminator CspA)