myRT

myRT report for GCA_001268585.1_YE14

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Seq: CXWR01000001.1 Escheichia coli genome assembly YE14, contig YE14_1, whole genome shotgun sequence (619745 bp)
Overview 1 RT 1: 36854-39181 bp Neighborhood of RT #1 [36854, 39181] YhhI YhhI YhhI RVT-GII group_II_RT_mat Feature: gene Location: 36854-37042 bp Feature: domain Description: YhhI Location: 36863-37025 bp Feature: domain Description: YhhI Location: 36863-37025 bp Feature: gene Location: 37045-37323 bp Feature: domain Description: YhhI Location: 37057-37180 bp Feature: domain Description: YhhI Location: 37057-371 80 bp Feature: domain Description: YhhI Location: 37180-37264 bp Feature: domain Description: YhhI Location: 371 80-37264 bp Feature: gene Location: 38009-38194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38015-38177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3801 5-381 77 bp Feature: gene Location: 38595-38816 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 38601-38805 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 38601 -38805 bp Feature: gene Location: 38939-39181 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhI (COG5433), RVT-GII, group_II_RT_mat (TIGR04416)

Seq: CXWR01000008.1 Escheichia coli genome assembly YE14, contig YE14_8, whole genome shotgun sequence (183985 bp)
Overview 1 RT 1: 91151-96693 bp Neighborhood of RT #1 [91151, 96812] SLATT_5 RVT-UG17 Caudo_TAP phage_tail_N Phage_fiber_2 Phage_fiber_2 Phage_fiber_2 Collar Phage_fiber Phage_fiber Phage_fiber Phage_fiber Feature: gene Location: 91151-91291 bp Feature: gene Location: 91304-91855 bp Feature: domain Description: SLATT_5 Location: 91310-91826 bp Feature: domain Description: SLATT_5 Location: 91310-9182 6 bp Feature: gene Location: 91833-93203 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 92061-92667 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 92 061-92 667 bp Feature: gene Location: 93316-93900 bp Feature: domain Description: Caudo_TAP Location: 93532-93889 bp Feature: domain Description: Caudo_TAP Location: 93532 -93889 bp Feature: gene Location: 93900-96812 bp Feature: domain Description: phage_tail_N Location: 93903-94302 bp Feature: domain Description: phage_tail_N Location: 93903-94302 bp Feature: domain Description: Phage_fiber_2 Location: 95286-95406 bp Feature: domain Description: Phage_fiber_2 Location: 952 86-95406 bp Feature: domain Description: Phage_fiber_2 Location: 95418-95538 bp Feature: domain Description: Phage_fiber_2 Location: 95418-95538 bp Feature: domain Description: Phage_fiber_2 Location: 95550-95667 bp Feature: domain Description: Phage_fiber_2 Location: 95550-95667 bp Feature: domain Description: Collar Location: 96183-96321 bp Feature: domain Description: Collar Location: 96183-9632 1 bp Feature: domain Description: Phage_fiber Location: 96372-96411 bp Feature: domain Description: Phage_fiber Location: 96372 -96411 bp Feature: domain Description: Phage_fiber Location: 96468-96507 bp Feature: domain Description: Phage_fiber Location: 96468-96507 bp Feature: domain Description: Phage_fiber Location: 96615-96654 bp Feature: domain Description: Phage_fiber Location: 96615-96654 bp Feature: domain Description: Phage_fiber Location: 96660-96693 bp Feature: domain Description: Phage_fiber Location: 96660-96693 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, Caudo_TAP (pfam02413), phage_tail_N (pfam08400), Phage_fiber_2 (pfam03406), Collar (pfam07484), Phage_fiber (pfam03335)

Seq: CXWR01000039.1 Escheichia coli genome assembly YE14, contig YE14_39, whole genome shotgun sequence (22162 bp)
Overview 1 RT 1: 3305-8890 bp Neighborhood of RT #1 [3305, 8890] RVT-UG8 RVT-UG3 PRK09678 Feature: gene Location: 3305-3526 bp Feature: gene Location: 3528-3686 bp Feature: gene Location: 3952-5970 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 4528-4978 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 4528-4978 bp Feature: gene Location: 5961-7322 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 6333-6828 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 63 3 3 -6828 bp Feature: gene Location: 7857-8129 bp Feature: domain Description: PRK09678 Location: 7866-8022 bp Feature: domain Description: PRK09678 Location: 7866-8022 bp Feature: gene Location: 8129-8890 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG8, RVT-UG3, PRK09678 (DNA-binding transcriptional regulator; Provisional)

Seq: CXWR01000040.1 Escheichia coli genome assembly YE14, contig YE14_40, whole genome shotgun sequence (14249 bp)
Overview 1 RT 1: 1-3880 bp Neighborhood of RT #1 [1, 4047] HTH_38 Tra8 PHA02517 RVT-GII GIIM PHA02517 COG2085 Feature: gene Location: 1-468 bp Feature: domain Description: HTH_38 Location: 10-124 bp Feature: domain Description: HTH_38 Location: 10-124 bp Feature: domain Description: Tra8 Location: 160-466 bp Feature: domain Description: Tra8 Location: 160-4 66 bp Feature: gene Location: 599-1024 bp Feature: domain Description: PHA02517 Location: 623-959 bp Feature: domain Description: PHA02517 Location: 623-959 bp Feature: gene Location: 1616-3139 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1889-2621 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1889-2621 bp Feature: domain Description: GIIM Note: maturase Location: 2696-2894 bp Feature: domain Description: GIIM Note: maturase Location: 2696-2894 bp Feature: gene Location: 3304-3468 bp Feature: domain Description: PHA02517 Location: 3307-3397 bp Feature: domain Description: PHA02517 Location: 3307-3397 bp Feature: gene Location: 3634-4047 bp Feature: domain Description: COG2085 Location: 3733-3880 bp Feature: domain Description: COG2085 Location: 3733-3880 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_38 (pfam13936), Tra8 (COG2826), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), COG2085 (Predicted dinucleotide-binding enzyme )