myRT

myRT report for GCA_001268705.1_YE21

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Seq: CXXZ01000013.1 Escheichia coli genome assembly YE21, contig YE21_13, whole genome shotgun sequence (122070 bp)
Overview 1 RT 1: 115169-120534 bp Neighborhood of RT #1 [115169, 120569] RVT-UG7 PRK09692 proA Feature: gene Location: 115169-115309 bp Feature: gene Location: 115419-116159 bp Feature: gene Location: 116156-117784 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 116564-116993 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 1 1 6564-1 1 6993 bp Feature: gene Location: 117777-118961 bp Feature: domain Description: PRK09692 Location: 117783-118938 bp Feature: domain Description: PRK09692 Location: 1 1 7783-1 1 8938 bp Feature: gene Location: 119316-120569 bp Feature: domain Description: proA Location: 119343-120534 bp Feature: domain Description: proA Location: 1 1 9343-1 20534 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG7, PRK09692 (Integrase; provisional), proA (TIGR00407)

Seq: CXXZ01000057.1 Escheichia coli genome assembly YE21, contig YE21_57, whole genome shotgun sequence (4876 bp)
Overview 1 RT 1: 342-4168 bp Neighborhood of RT #1 [342, 4168] DDE_Tnp_IS66 DDE_Tnp_IS66_C PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 342-860 bp Feature: domain Description: DDE_Tnp_IS66 Location: 360-705 bp Feature: domain Description: DDE_Tnp_IS66 Location: 360-705 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 726-837 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 72 6-837 bp Feature: gene Location: 995-1207 bp Feature: domain Description: PHA02517 Location: 998-1142 bp Feature: domain Description: PHA02 517 Location: 998-1142 bp Feature: gene Location: 1799-3322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2072-2804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 072 -2 804 bp Feature: domain Description: GIIM Note: maturase Location: 2879-3077 bp Feature: domain Description: GIIM Note: maturase Location: 2 879-3077 bp Feature: gene Location: 3439-3885 bp Feature: domain Description: PHA02517 Location: 3442-3883 bp Feature: domain Description: PHA02 517 Location: 3442 -3883 bp Feature: gene Location: 3851-4168 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)