myRT

myRT report for GCA_001269385.1_DM1.a1

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Seq: CXOO01000010.1 Limnohabitans sp. DM1 genome assembly DM1.a1, contig Contig_1, whole genome shotgun sequence (416872 bp)
Overview 1 RT 1: 91754-94698 bp Neighborhood of RT #1 [91754, 94698] CitB GIIM RVT-GII Feature: gene Location: 91754-92455 bp Feature: domain Description: CitB Location: 91856-92447 bp Feature: domain Description: CitB Location: 91 856-92447 bp Feature: gene Location: 92559-92870 bp Feature: domain Description: GIIM Note: maturase Location: 92565-92718 bp Feature: domain Description: GIIM Note: maturase Location: 92565-9271 8 bp Feature: gene Location: 92922-93923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93252-93864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93252-93864 bp Feature: gene Location: 94088-94243 bp Feature: gene Location: 94351-94698 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: CXOO01000022.1 Limnohabitans sp. DM1 genome assembly DM1.a1, contig Contig_2, whole genome shotgun sequence (323677 bp)
Overview 1 RT 1: 250982-252785 bp Neighborhood of RT #1 [250982, 252785] GIIM RVT-GII Feature: gene Location: 250982-251293 bp Feature: domain Description: GIIM Note: maturase Location: 250988-251141 bp Feature: domain Description: GIIM Note: maturase Location: 2 50988-2 51141 bp Feature: gene Location: 251345-251503 bp Feature: gene Location: 251535-252230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 251748-252225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 51748-2 52 2 2 5 bp Feature: gene Location: 252261-252461 bp Feature: gene Location: 252648-252785 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: CXOO01000033.1 Limnohabitans sp. DM1 genome assembly DM1.a1, contig Contig_16, whole genome shotgun sequence (93573 bp)
Overview 1 RT 1: 3-4803 bp Neighborhood of RT #1 [3, 5585] Tra5 RVT_N RVT-GII YkfC HNHc pNOB8_ParB_N_like NRBF2 HTH_XRE Feature: gene Location: 3-1064 bp Feature: domain Description: Tra5 Location: 294-885 bp Feature: domain Description: Tra5 Location: 294-885 bp Feature: gene Location: 1753-3384 bp Feature: RT Description: RVT_N Location: 1801-2044 bp Feature: RT Description: RVT_N Location: 1801-2044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2089-2728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2089-2728 bp Feature: domain Description: YkfC Location: 2860-3079 bp Feature: domain Description: YkfC Location: 2860-3 079 bp Feature: domain Description: HNHc Note: nucleases Location: 3217-3358 bp Feature: domain Description: HNHc Note: nucleases Location: 3 217-3 3 58 bp Feature: gene Location: 3584-4453 bp Feature: domain Description: pNOB8_ParB_N_like Location: 3668-3809 bp Feature: domain Description: pNOB8_ParB_N_like Location: 3 668-3 809 bp Feature: domain Description: NRBF2 Location: 4289-4433 bp Feature: domain Description: NRBF2 Location: 4289-443 3 bp Feature: gene Location: 4590-5585 bp Feature: domain Description: HTH_XRE Location: 4623-4803 bp Feature: domain Description: HTH_XRE Location: 4623 -4803 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: CXOO01000050.1 Limnohabitans sp. DM1 genome assembly DM1.a1, contig Contig_17, whole genome shotgun sequence (56487 bp)
Overview 1 RT 1: 16761-20558 bp Neighborhood of RT #1 [16761, 20558] IstB_IS21 RVT-GII GIIM Feature: gene Location: 16761-17525 bp Feature: domain Description: IstB_IS21 Location: 16929-17448 bp Feature: domain Description: IstB_IS21 Location: 16929-174 4 8 bp Feature: gene Location: 17896-18231 bp Feature: gene Location: 18240-19631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18597-19209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18597-19209 bp Feature: domain Description: GIIM Note: maturase Location: 19269-19482 bp Feature: domain Description: GIIM Note: maturase Location: 19269-194 82 bp Feature: gene Location: 19860-20051 bp Feature: gene Location: 20073-20558 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: CXOO01000052.1 Limnohabitans sp. DM1 genome assembly DM1.a1, contig Contig_43, whole genome shotgun sequence (33553 bp)
Overview 1 RT 1: 3178-10644 bp Neighborhood of RT #1 [3178, 10649] DUF262 HNH ResIII COG3421 SSL2 RVT-Retrons KOG1157 umuC Feature: gene Location: 3178-4512 bp Feature: domain Description: DUF262 Location: 3217-3685 bp Feature: domain Description: DUF262 Location: 3217-3685 bp Feature: domain Description: HNH Note: nucleases Location: 4354-4486 bp Feature: domain Description: HNH Note: nucleases Location: 435 4-4486 bp Feature: gene Location: 4513-7848 bp Feature: domain Description: ResIII Location: 4972-5497 bp Feature: domain Description: ResIII Location: 4972-5 497 bp Feature: domain Description: COG3421 Location: 5521-5791 bp Feature: domain Description: COG3421 Location: 5 5 21-5 791 bp Feature: domain Description: SSL2 Location: 6172-6412 bp Feature: domain Description: SSL2 Location: 6172-6412 bp Feature: gene Location: 8228-9958 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8390-9005 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8390-9005 bp Feature: gene Location: 10020-10463 bp Feature: domain Description: KOG1157 Location: 10041-10407 bp Feature: domain Description: KOG115 7 Location: 10041-10407 bp Feature: gene Location: 10515-10649 bp Feature: domain Description: umuC Location: 10518-10644 bp Feature: domain Description: umuC Location: 105 18-10644 bp Sorry, your browser does not support inline SVG.
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