myRT

myRT report for GCA_001269685.1_ASM126968v1

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Seq: LHVF01000011.1 Pseudomonas thivervalensis strain PITR2 PREFIX_contig_11, whole genome shotgun sequence (921073 bp)
Overview 1 RT 1: 78000-83600 bp Neighborhood of RT #1 [78000, 83614] ArdC RVT-GII RVT-GII GIIM TraI_2 TraI_2_C Feature: gene Location: 78000-78323 bp Feature: gene Location: 78461-79423 bp Feature: domain Description: ArdC Location: 78470-79391 bp Feature: domain Description: ArdC Location: 78470-79391 bp Feature: gene Location: 79978-80586 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80269-80578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80269-80578 bp Feature: gene Location: 80772-81323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80781-80874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80781 -80874 bp Feature: domain Description: GIIM Note: maturase Location: 80925-81156 bp Feature: domain Description: GIIM Note: maturase Location: 80925-81 1 56 bp Feature: gene Location: 81465-81659 bp Feature: gene Location: 81887-83614 bp Feature: domain Description: TraI_2 Location: 81959-82895 bp Feature: domain Description: TraI_2 Location: 81 959-82895 bp Feature: domain Description: TraI_2_C Location: 83240-83600 bp Feature: domain Description: TraI_2_C Location: 83240-83600 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdC (COG4227), RVT-GII, GIIM (pfam08388), TraI_2 (pfam07514), TraI_2_C (pfam07515)

Seq: LHVF01000005.1 Pseudomonas thivervalensis strain PITR2 PREFIX_contig_5, whole genome shotgun sequence (223994 bp)
Overview 1 RT 1: 11906-18384 bp Neighborhood of RT #1 [11906, 18836] PRK09967 RVT-G2L4 AAA_21 DUF4435 Feature: gene Location: 11906-12409 bp Feature: domain Description: PRK09967 Location: 11948-12401 bp Feature: domain Description: PRK09967 Location: 11948-12 401 bp Feature: gene Location: 12912-14240 bp Feature: gene Location: 14697-15476 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 14703-15027 bp Feature: RT Description: RVT-G2 L4 Note: G2 L4 RT Location: 14703-1502 7 bp Feature: gene Location: 16595-17908 bp Feature: domain Description: AAA_21 Location: 16688-17849 bp Feature: domain Description: AAA_2 1 Location: 16688-17849 bp Feature: gene Location: 17976-18836 bp Feature: domain Description: DUF4435 Location: 17985-18384 bp Feature: domain Description: DUF4435 Location: 17985-18384 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09967 (OmpA family protein), RVT-G2L4, AAA_21 (pfam13304), DUF4435 (pfam14491)

Seq: LHVF01000007.1 Pseudomonas thivervalensis strain PITR2 PREFIX_contig_7, whole genome shotgun sequence (989931 bp)
Overview 1 RT 1: 666547-669912 bp Neighborhood of RT #1 [666547, 669929] HNH_3 RVT-DGRs Avd_like DUF1566 Feature: gene Location: 666547-666714 bp Feature: gene Location: 666770-667486 bp Feature: domain Description: HNH_3 Location: 667247-667379 bp Feature: domain Description: HNH_3 Location: 667247-6673 79 bp Feature: gene Location: 667527-668645 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 667737-668421 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 66773 7-668421 bp Feature: gene Location: 668899-669255 bp Feature: domain Description: Avd_like Location: 668926-669235 bp Feature: domain Description: Avd_like Location: 668926-66923 5 bp Feature: gene Location: 669309-669929 bp Feature: domain Description: DUF1566 Location: 669546-669912 bp Feature: domain Description: DUF1566 Location: 669546-669912 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HNH_3 (pfam13392), RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)