myRT

myRT report for GCA_001270005.1_ASM127000v1

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Seq: BBWG01000130.1 Pseudomonas syringae pv. actinidiae DNA, contig: Contig_130, strain: MAFF 212056, whole genome shotgun sequence (55749 bp)
Overview 1 RT 1: 26-4541 bp Neighborhood of RT #1 [26, 4594] RVT-G2L4 LysR ALDH_F6_MMSDH Feature: gene Location: 26-868 bp Ori: GAO95042.1 Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 68-653 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 68-653 bp Feature: gene Location: 1966-2910 bp Ori: GAO95043.1 Feature: domain Description: LysR Location: 2002-2854 bp Feature: domain Description: LysR Location: 2002-2854 bp Feature: gene Location: 3068-4594 bp Ori: GAO95044.1 Feature: domain Description: ALDH_F6_MMSDH Location: 3113-4541 bp Feature: domain Description: ALDH_F6_MMSDH Location: 31 1 3-4541 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-G2L4, LysR (COG0583), ALDH_F6_MMSDH (cd07085)

Seq: BBWG01000283.1 Pseudomonas syringae pv. actinidiae DNA, contig: Contig_283, strain: MAFF 212056, whole genome shotgun sequence (26325 bp)
Overview 1 RT 1: 381-4708 bp Neighborhood of RT #1 [381, 4734] RVT-GII GIIM PRK00153 PRK07994 Feature: gene Location: 381-1748 bp Ori: GAO97283.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 714-1329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 714-132 9 bp Feature: domain Description: GIIM Note: maturase Location: 1386-1614 bp Feature: domain Description: GIIM Note: maturase Location: 1386-1614 bp Feature: gene Location: 2109-2435 bp Ori: GAO97284.1 Feature: domain Description: PRK00153 Location: 2115-2424 bp Feature: domain Description: PRK00153 Location: 2 115-2 42 4 bp Feature: gene Location: 2497-4734 bp Ori: GAO97285.1 Feature: domain Description: PRK07994 Location: 2500-4708 bp Feature: domain Description: PRK07994 Location: 2 500-4708 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK00153 (YbaB/EbfC family nucleoid-associated protein), PRK07994 (DNA polymerase III subunits gamma and tau; Validated)

Seq: BBWG01000289.1 Pseudomonas syringae pv. actinidiae DNA, contig: Contig_289, strain: MAFF 212056, whole genome shotgun sequence (1845 bp)
Overview 1 RT 1: 51-1845 bp Neighborhood of RT #1 [51, 1845] RVT-GII GIIM Feature: gene Location: 51-1337 bp Ori: GAO97363.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294-909 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294-909 bp Feature: domain Description: GIIM Note: maturase Location: 954-1164 bp Feature: domain Description: GIIM Note: maturase Location: 954-1164 bp Feature: gene Location: 1782-1845 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)