myRT

myRT report for GCA_001270205.1_ASM127020v1

Download annotations/find similar RTs

Seq: LFZC01000022.1 Vibrio alginolyticus strain RM-12-1 contig22, whole genome shotgun sequence (125989 bp)
Overview 1 RT 1: 41033-47551 bp Neighborhood of RT #1 [41033, 47577] groEL RVT_N RVT-GII GIIM HNHc SapB Feature: gene Location: 41033-42679 bp Feature: domain Description: groEL Location: 41039-42659 bp Feature: domain Description: groEL Location: 41 039-42659 bp Feature: gene Location: 43201-43383 bp Feature: gene Location: 43800-45452 bp Feature: RT Description: RVT_N Location: 43845-44088 bp Feature: RT Description: RVT_N Location: 43845-44088 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44133-44778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 441 33-44778 bp Feature: domain Description: GIIM Note: maturase Location: 44829-45063 bp Feature: domain Description: GIIM Note: maturase Location: 44829-45063 bp Feature: domain Description: HNHc Note: nucleases Location: 45279-45441 bp Feature: domain Description: HNHc Note: nucleases Location: 45279-45441 bp Feature: gene Location: 46416-46979 bp Feature: gene Location: 47080-47577 bp Feature: domain Description: SapB Location: 47137-47551 bp Feature: domain Description: SapB Location: 471 37-47551 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT groEL (PRK12852), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), SapB (smart00741)

Seq: LFZC01000042.1 Vibrio alginolyticus strain RM-12-1 contig42, whole genome shotgun sequence (1192369 bp)
Overview 1 RT 1: 203061-207615 bp Neighborhood of RT #1 [203061, 207615] PHA01082 DUF3653 RVT-Retrons Feature: gene Location: 203061-203426 bp Feature: domain Description: PHA01082 Location: 203064-203421 bp Feature: domain Description: PHA01082 Location: 2 03064-2 0342 1 bp Feature: gene Location: 203756-204178 bp Feature: domain Description: DUF3653 Location: 203921-204122 bp Feature: domain Description: DUF3653 Location: 2 0392 1-2 0412 2 bp Feature: gene Location: 204186-205949 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 204324-204942 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 0432 4-2 04942 bp Feature: gene Location: 206359-207423 bp Feature: gene Location: 207436-207615 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA01082 (putative transcription regulator), DUF3653 (pfam12375), RVT-Retrons

Seq: LFZC01000053.1 Vibrio alginolyticus strain RM-12-1 contig53, whole genome shotgun sequence (137672 bp)
Overview 1 RT 1: 5092-9865 bp Neighborhood of RT #1 [5092, 9865] RVT-Retrons Feature: gene Location: 5092-5814 bp Feature: gene Location: 5934-6662 bp Feature: gene Location: 6640-7839 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6787-7369 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6787-73 69 bp Feature: gene Location: 8562-9101 bp Feature: gene Location: 9104-9865 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: LFZC01000020.1 Vibrio alginolyticus strain RM-12-1 contig20, whole genome shotgun sequence (238313 bp)
Overview 1 RT 1: 76645-81794 bp Neighborhood of RT #1 [76645, 81808] OMP_b-brl RVT-Retrons HTH_XRE PinE Feature: gene Location: 76645-77208 bp Feature: domain Description: OMP_b-brl Location: 76675-77206 bp Feature: domain Description: OMP_b-brl Location: 76675-77206 bp Feature: gene Location: 77892-78377 bp Feature: gene Location: 79061-80011 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 79247-79781 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7924 7-79781 bp Feature: gene Location: 79980-80297 bp Feature: domain Description: HTH_XRE Location: 79992-80154 bp Feature: domain Description: HTH_XRE Location: 79992-80154 bp Feature: gene Location: 81164-81808 bp Feature: domain Description: PinE Location: 81197-81794 bp Feature: domain Description: PinE Location: 81197-81794 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OMP_b-brl (pfam13505), RVT-Retrons, HTH_XRE (smart00530), PinE (COG1961)