myRT

myRT report for GCA_001270785.1_ASM127078v1

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Seq: LIGY01000076.1 Lactobacillus johnsonii 16 Contig_81_length_35996, whole genome shotgun sequence (35996 bp)
Overview 1 RT 1: 15396-21089 bp Neighborhood of RT #1 [15396, 21091] Dps YfcC RVT-GII GIIM phoU_full PRK14251 Feature: gene Location: 15396-15863 bp Ori: KOH02351.1 Feature: domain Description: Dps Location: 15411-15837 bp Feature: domain Description: Dps Location: 1 541 1 -1 5837 bp Feature: gene Location: 15947-17485 bp Ori: KOH02352.1 Feature: domain Description: YfcC Location: 15965-17474 bp Feature: domain Description: YfcC Location: 1 5965-1 7474 bp Feature: gene Location: 17669-18964 bp Ori: KOH02353.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17870-18488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 7870-1 8488 bp Feature: domain Description: GIIM Note: maturase Location: 18542-18752 bp Feature: domain Description: GIIM Note: maturase Location: 1 8542-1 8752 bp Feature: gene Location: 19636-20319 bp Ori: KOH02354.1 Feature: domain Description: phoU_full Location: 19654-20275 bp Feature: domain Description: phoU_full Location: 1 9654-20275 bp Feature: gene Location: 20336-21091 bp Ori: KOH02355.1 Feature: domain Description: PRK14251 Location: 20339-21089 bp Feature: domain Description: PRK1 4251 Location: 20339-21 089 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dps (COG0783), YfcC (COG1288), RVT-GII, GIIM (pfam08388), phoU_full (TIGR02135), PRK14251 (phosphate ABC transporter ATP-binding protein; Provisional)

Seq: LIGY01000108.1 Lactobacillus johnsonii 16 Contig_138_length_74675, whole genome shotgun sequence (74675 bp)
Overview 1 RT 1: 40608-44778 bp Neighborhood of RT #1 [40608, 44795] AcrR RVT-GII GIIM SsuE SsuE Feature: gene Location: 40608-40850 bp Feature: gene Location: 40996-41619 bp Ori: KOH02048.1 Feature: domain Description: AcrR Location: 41014-41359 bp Feature: domain Description: AcrR Location: 41014-41359 bp Feature: gene Location: 42228-43523 bp Ori: KOH02049.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42429-43047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 42 9-43047 bp Feature: domain Description: GIIM Note: maturase Location: 43101-43311 bp Feature: domain Description: GIIM Note: maturase Location: 43101-43311 bp Feature: gene Location: 43692-44228 bp Ori: KOH02050.1 Feature: domain Description: SsuE Location: 43695-44211 bp Feature: domain Description: SsuE Location: 43695-442 11 bp Feature: gene Location: 44241-44795 bp Ori: KOH02051.1 Feature: domain Description: SsuE Location: 44244-44778 bp Feature: domain Description: SsuE Location: 442 44-44778 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AcrR (COG1309), RVT-GII, GIIM (pfam08388), SsuE (COG0431)

Seq: LIGY01000009.1 Lactobacillus johnsonii 16 Contig_10_length_839, whole genome shotgun sequence (839 bp)
Overview 1 RT 1: 568-838 bp Neighborhood of RT #1 [568, 839] RVT-GII Feature: gene Location: 568-839 bp Ori: KOH03039.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 769-838 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 769-83 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: LIGY01000145.1 Lactobacillus johnsonii 16 Contig_198_length_6528, whole genome shotgun sequence (6528 bp)
Overview 1 RT 1: 219-6528 bp Neighborhood of RT #1 [219, 6528] TIGR00045 Nitroreductase_1 RVT-GII GIIM Feature: gene Location: 219-1358 bp Ori: KOH01567.1 Feature: domain Description: TIGR00045 Location: 228-1347 bp Feature: domain Description: TIGR0004 5 Location: 228-134 7 bp Feature: gene Location: 1958-2602 bp Ori: KOH01568.1 Feature: domain Description: Nitroreductase_1 Location: 1991-2588 bp Feature: domain Description: Nitroreductase_1 Location: 1991-2588 bp Feature: gene Location: 3270-4565 bp Ori: KOH01569.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3471-4089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 71-4 089 bp Feature: domain Description: GIIM Note: maturase Location: 4143-4353 bp Feature: domain Description: GIIM Note: maturase Location: 4 14 3-4 353 bp Feature: gene Location: 4649-6528 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR00045 (glycerate kinase), Nitroreductase_1, RVT-GII, GIIM (pfam08388)

Seq: LIGY01000156.1 Lactobacillus johnsonii 16 Contig_210_length_13946, whole genome shotgun sequence (13946 bp)
Overview 1 RT 1: 6122-13874 bp Neighborhood of RT #1 [6122, 13882] RVT-GII GIIM PRK13805 AnsP Feature: gene Location: 6122-6307 bp Feature: gene Location: 7029-7454 bp Feature: gene Location: 7651-8946 bp Ori: KOH01414.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7852-8470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 785 2-8470 bp Feature: domain Description: GIIM Note: maturase Location: 8524-8734 bp Feature: domain Description: GIIM Note: maturase Location: 85 24-8734 bp Feature: gene Location: 9585-12194 bp Ori: KOH01415.1 Feature: domain Description: PRK13805 Location: 9612-12171 bp Feature: domain Description: PRK13805 Location: 9612-12171 bp Feature: gene Location: 12509-13882 bp Ori: KOH01416.1 Feature: domain Description: AnsP Location: 12533-13874 bp Feature: domain Description: AnsP Location: 125 33-13874 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK13805 (bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional), AnsP (COG1113)

Seq: LIGY01000144.1 Lactobacillus johnsonii 16 Contig_197_length_60081, whole genome shotgun sequence (60081 bp)
Overview 1 RT 1: 24431-29932 bp Neighborhood of RT #1 [24431, 29964] AcyP PRK02463 RVT-GII GIIM HK_WalK HK_WalK OmpR Feature: gene Location: 24431-24706 bp Ori: KOH01594.1 Feature: domain Description: AcyP Location: 24434-24704 bp Feature: domain Description: AcyP Location: 24434-24704 bp Feature: gene Location: 24770-25753 bp Ori: KOH01595.1 Feature: domain Description: PRK02463 Location: 24773-25730 bp Feature: domain Description: PRK0246 3 Location: 24773-25730 bp Feature: gene Location: 25837-27132 bp Ori: KOH01596.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26038-26656 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26 038-26 6 56 bp Feature: domain Description: GIIM Note: maturase Location: 26710-26920 bp Feature: domain Description: GIIM Note: maturase Location: 26 710-26 920 bp Feature: gene Location: 27732-29270 bp Ori: KOH01597.1 Feature: domain Description: HK_WalK Location: 28218-28569 bp Feature: domain Description: HK_WalK Location: 28218-2856 9 bp Feature: domain Description: HK_WalK Location: 28575-29244 bp Feature: domain Description: HK_WalK Location: 28575-29244 bp Feature: gene Location: 29236-29964 bp Ori: KOH01598.1 Feature: domain Description: OmpR Location: 29245-29932 bp Feature: domain Description: OmpR Location: 29245-29932 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AcyP (COG1254), PRK02463 (OxaA-like protein precursor; Provisional), RVT-GII, GIIM (pfam08388), HK_WalK (NF033092), OmpR (COG0745)

Seq: LIGY01000127.1 Lactobacillus johnsonii 16 Contig_176_length_44638, whole genome shotgun sequence (44638 bp)
Overview 1 RT 1: 17824-23886 bp Neighborhood of RT #1 [17824, 23891] PRK00865 DUF2507 RVT-GII GIIM thioredoxin PRK00409 Feature: gene Location: 17824-18624 bp Ori: KOH01815.1 Feature: domain Description: PRK00865 Location: 17830-18583 bp Feature: domain Description: PRK00865 Location: 17 830-18583 bp Feature: gene Location: 18721-19116 bp Ori: KOH01816.1 Feature: domain Description: DUF2507 Location: 18748-19108 bp Feature: domain Description: DUF2507 Location: 187 48-19108 bp Feature: gene Location: 19228-20523 bp Ori: KOH01817.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19429-20047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19429-20047 bp Feature: domain Description: GIIM Note: maturase Location: 20101-20311 bp Feature: domain Description: GIIM Note: maturase Location: 20101-20311 bp Feature: gene Location: 21135-21446 bp Ori: KOH01818.1 Feature: domain Description: thioredoxin Location: 21153-21435 bp Feature: domain Description: thioredoxin Location: 21153-21435 bp Feature: gene Location: 21525-23891 bp Ori: KOH01819.1 Feature: domain Description: PRK00409 Location: 21528-23886 bp Feature: domain Description: PRK00409 Location: 21528-23886 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00865 (glutamate racemase; Provisional), DUF2507 (pfam10702), RVT-GII, GIIM (pfam08388), thioredoxin (TIGR01068), PRK00409 (recombination and DNA strand exchange inhibitor protein; Reviewed)

Seq: LIGY01000046.1 Lactobacillus johnsonii 16 Contig_49_length_44561, whole genome shotgun sequence (44561 bp)
Overview 1 RT 1: 1-4337 bp Neighborhood of RT #1 [1, 4366] DUF4097 RVT-GII GIIM PRK14220 CrcB Feature: gene Location: 1-295 bp Feature: gene Location: 407-1624 bp Ori: KOH02618.1 Feature: domain Description: DUF4097 Location: 806-1217 bp Feature: domain Description: DUF4097 Location: 8 06-1217 bp Feature: gene Location: 1718-3013 bp Ori: KOH02619.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1919-2537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1919-2537 bp Feature: domain Description: GIIM Note: maturase Location: 2591-2801 bp Feature: domain Description: GIIM Note: maturase Location: 2591-28 01 bp Feature: gene Location: 3621-3980 bp Ori: KOH02620.1 Feature: domain Description: PRK14220 Location: 3627-3978 bp Feature: domain Description: PRK14220 Location: 3627-3978 bp Feature: gene Location: 3977-4366 bp Ori: KOH02621.1 Feature: domain Description: CrcB Location: 3992-4337 bp Feature: domain Description: CrcB Location: 3992-4337 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4097 (pfam13349), RVT-GII, GIIM (pfam08388), PRK14220 (fluoride efflux transporter CrcB), CrcB (COG0239)