myRT

myRT report for GCA_001274635.1_ASM127463v1

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Seq: LBGV01000001.1 Persicobacter sp. CCB-QB2 contig1, whole genome shotgun sequence (3843563 bp)
Overview 1 RT 1: 64475-71596 bp 2 RT 2: 2373496-2380759 bp 3 RT 3: 2647838-2652895 bp 4 RT 4: 3554572-3560284 bp Neighborhood of RT #1 [64475, 71649] RVT-GII GIIM PD40 PD40 PD40 PD40 OmpA Lon Neighborhood of RT #2 [2373496, 2380759] alaS gatB RVT-GII GIIM Neighborhood of RT #3 [2647838, 2652909] Ribosomal_S20p PRK00024 RVT-GII GIIM Zn_Tnp_IS1595 DDE_Tnp_IS1595 NeuD_NnaD Neighborhood of RT #4 [3554572, 3560289] OMP_b-brl RVT-GII GIIM uvrA UvrA Feature: gene Location: 64475-64612 bp Feature: gene Location: 64682-64876 bp Feature: gene Location: 65010-66377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65343-66009 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65343-66009 bp Feature: domain Description: GIIM Note: maturase Location: 66093-66297 bp Feature: domain Description: GIIM Note: maturase Location: 66093-66297 bp Feature: gene Location: 66966-69026 bp Feature: domain Description: PD40 Location: 67563-67659 bp Feature: domain Description: PD40 Location: 67563-67659 bp Feature: domain Description: PD40 Location: 67740-67845 bp Feature: domain Description: PD40 Location: 67740-67845 bp Feature: domain Description: PD40 Location: 67893-67992 bp Feature: domain Description: PD40 Location: 67893-67992 bp Feature: domain Description: PD40 Location: 68055-68172 bp Feature: domain Description: PD40 Location: 68055-681 72 bp Feature: domain Description: OmpA Location: 68625-68964 bp Feature: domain Description: OmpA Location: 68625-68964 bp Feature: gene Location: 69166-71649 bp Feature: domain Description: Lon Location: 69298-71596 bp Feature: domain Description: Lon Location: 69298-71 596 bp Feature: gene Location: 2373496-2376117 bp Feature: domain Description: alaS Location: 2373499-2376112 bp Feature: domain Description: alaS Location: 2373499-23761 1 2 bp Feature: gene Location: 2376226-2377689 bp Feature: domain Description: gatB Location: 2376256-2377681 bp Feature: domain Description: gatB Location: 2376256-2377681 bp Feature: gene Location: 2378467-2379720 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2378680-2379337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2378680-2379337 bp Feature: domain Description: GIIM Note: maturase Location: 2379424-2379640 bp Feature: domain Description: GIIM Note: maturase Location: 2379424-2379640 bp Feature: gene Location: 2380144-2380272 bp Feature: gene Location: 2380511-2380759 bp Feature: gene Location: 2647838-2648089 bp Feature: domain Description: Ribosomal_S20p Location: 2647844-2648081 bp Feature: domain Description: Ribosomal_S20p Location: 2647844-2648081 bp Feature: gene Location: 2648211-2648915 bp Feature: domain Description: PRK00024 Location: 2648244-2648904 bp Feature: domain Description: PRK00024 Location: 2648244-2648904 bp Feature: gene Location: 2649270-2650559 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2649525-2650191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2649525-26501 91 bp Feature: domain Description: GIIM Note: maturase Location: 2650272-2650479 bp Feature: domain Description: GIIM Note: maturase Location: 2650272-2650479 bp Feature: gene Location: 2651241-2652134 bp Feature: domain Description: Zn_Tnp_IS1595 Location: 2651295-2651424 bp Feature: domain Description: Zn_Tnp_IS1 595 Location: 2651 295-2651 424 bp Feature: domain Description: DDE_Tnp_IS1595 Location: 2651625-2652042 bp Feature: domain Description: DDE_Tnp_IS1 595 Location: 2651 625-2652042 bp Feature: gene Location: 2652274-2652909 bp Feature: domain Description: NeuD_NnaD Location: 2652289-2652895 bp Feature: domain Description: NeuD_NnaD Location: 2652289-2652895 bp Feature: gene Location: 3554572-3555195 bp Feature: domain Description: OMP_b-brl Location: 3554608-3555049 bp Feature: domain Description: OMP_b-brl Location: 3554608-3555049 bp Feature: gene Location: 3555688-3555852 bp Feature: gene Location: 3555880-3557277 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3556219-3556837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 355621 9-3556837 bp Feature: domain Description: GIIM Note: maturase Location: 3556891-3557119 bp Feature: domain Description: GIIM Note: maturase Location: 3556891 -35571 1 9 bp Feature: gene Location: 3557441-3559981 bp Feature: domain Description: uvrA Location: 3557495-3559964 bp Feature: domain Description: uvrA Location: 3557495-3559964 bp Feature: gene Location: 3560080-3560289 bp Feature: domain Description: UvrA Location: 3560083-3560284 bp Feature: domain Description: UvrA Location: 3560083-3560284 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PD40 (pfam07676), OmpA (pfam00691), Lon (COG0466), alaS (TIGR00344), gatB (TIGR00133), Ribosomal_S20p (pfam01649), PRK00024 (DNA repair protein RadC), Zn_Tnp_IS1595 (pfam12760)
DDE_Tnp_IS1595 (pfam12762), NeuD_NnaD (TIGR03570), OMP_b-brl (pfam13505), uvrA (PRK00349), UvrA (COG0178)