myRT

myRT report for GCA_001276195.1_ASM127619v1

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Seq: LDEU01000010.1 Bacillus thuringiensis strain BMB3201 BMB3201_contig000010, whole genome shotgun sequence (5176 bp)
Overview 1 RT 1: 3092-4948 bp Neighborhood of RT #1 [3092, 5031] RVT-GII GIIM Feature: gene Location: 3092-3241 bp Feature: gene Location: 3371-3550 bp Feature: gene Location: 3700-5031 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4009-4648 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4009-4648 bp Feature: domain Description: GIIM Note: maturase Location: 4723-4948 bp Feature: domain Description: GIIM Note: maturase Location: 4723-4948 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LDEU01000011.1 Bacillus thuringiensis strain BMB3201 BMB3201_contig000011, whole genome shotgun sequence (8451 bp)
Overview 1 RT 1: 5436-8223 bp Neighborhood of RT #1 [5436, 8306] DDE_Tnp_1 RVT-GII GIIM Feature: gene Location: 5436-6494 bp Feature: domain Description: DDE_Tnp_1 Location: 5796-6480 bp Feature: domain Description: DDE_Tnp_1 Location: 5796-6480 bp Feature: gene Location: 6646-6825 bp Feature: gene Location: 6975-8306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7284-7923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72 84-792 3 bp Feature: domain Description: GIIM Note: maturase Location: 7998-8223 bp Feature: domain Description: GIIM Note: maturase Location: 7998-82 2 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, GIIM (pfam08388)

Seq: LDEU01000024.1 Bacillus thuringiensis strain BMB3201 BMB3201_contig000024, whole genome shotgun sequence (37666 bp)
Overview 1 RT 1: 6487-12301 bp Neighborhood of RT #1 [6487, 12318] AAA_10 RVT-GII HNHc AAA_10 Feature: gene Location: 6487-7011 bp Feature: gene Location: 7055-8068 bp Feature: domain Description: AAA_10 Location: 7094-8021 bp Feature: domain Description: AAA_10 Location: 7094-8021 bp Feature: gene Location: 8150-9982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8450-9155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8450-9155 bp Feature: domain Description: HNHc Note: nucleases Location: 9734-9866 bp Feature: domain Description: HNHc Note: nucleases Location: 973 4-9866 bp Feature: gene Location: 10276-10410 bp Feature: gene Location: 10711-12318 bp Feature: domain Description: AAA_10 Location: 12121-12301 bp Feature: domain Description: AAA_10 Location: 12121-123 01 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_10 (pfam12846), RVT-GII, HNHc (smart00507)

Seq: LDEU01000030.1 Bacillus thuringiensis strain BMB3201 BMB3201_contig000030, whole genome shotgun sequence (2454 bp)
Overview 1 RT 1: 119-2344 bp Neighborhood of RT #1 [119, 2451] zf-IS66 DDE_Tnp_IS66 RVT-GII GIIM Feature: gene Location: 119-1522 bp Feature: domain Description: zf-IS66 Location: 410-548 bp Feature: domain Description: zf-IS66 Location: 4 10-54 8 bp Feature: domain Description: DDE_Tnp_IS66 Location: 596-1403 bp Feature: domain Description: DDE_Tnp_IS66 Location: 596-14 03 bp Feature: gene Location: 1555-2451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1561-2062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1561-2062 bp Feature: domain Description: GIIM Note: maturase Location: 2176-2344 bp Feature: domain Description: GIIM Note: maturase Location: 2176-234 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388)

Seq: LDEU01000044.1 Bacillus thuringiensis strain BMB3201 BMB3201_contig000044, whole genome shotgun sequence (10963 bp)
Overview 1 RT 1: 7716-10551 bp Neighborhood of RT #1 [7716, 10574] NlpD Spr RVT-GII Intron_maturas2 HNHc Feature: gene Location: 7716-8591 bp Feature: domain Description: NlpD Location: 7731-8160 bp Feature: domain Description: NlpD Location: 7731-8160 bp Feature: domain Description: Spr Location: 8196-8532 bp Feature: domain Description: Spr Location: 8196-85 32 bp Feature: gene Location: 8615-8749 bp Feature: gene Location: 8751-10574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9015-9849 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9015 -9849 bp Feature: domain Description: Intron_maturas2 Location: 9918-10257 bp Feature: domain Description: Intron_maturas2 Location: 9918-1025 7 bp Feature: domain Description: HNHc Note: nucleases Location: 10395-10551 bp Feature: domain Description: HNHc Note: nucleases Location: 10395 -105 5 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NlpD (COG0739), Spr (COG0791), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: LDEU01000046.1 Bacillus thuringiensis strain BMB3201 BMB3201_contig000046, whole genome shotgun sequence (28419 bp)
Overview 1 RT 1: 25726-28253 bp Neighborhood of RT #1 [25726, 28253] RVT-GII GIIM Feature: gene Location: 25726-25938 bp Feature: gene Location: 26274-26432 bp Feature: gene Location: 26593-27924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26902-27541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26 902-27541 bp Feature: domain Description: GIIM Note: maturase Location: 27616-27841 bp Feature: domain Description: GIIM Note: maturase Location: 276 16 -27841 bp Feature: gene Location: 28074-28253 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LDEU01000047.1 Bacillus thuringiensis strain BMB3201 BMB3201_contig000047, whole genome shotgun sequence (11567 bp)
Overview 1 RT 1: 3978-11352 bp Neighborhood of RT #1 [3978, 11468] TrbL CwlT_like RVT-GII HNHc Feature: gene Location: 3978-7997 bp Feature: domain Description: TrbL Location: 4257-4755 bp Feature: domain Description: TrbL Location: 4257 -47 55 bp Feature: gene Location: 7994-8989 bp Feature: domain Description: CwlT_like Location: 8843-8966 bp Feature: domain Description: CwlT_like Location: 8843-8966 bp Feature: gene Location: 9699-11468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9957-10653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9957 -10653 bp Feature: domain Description: HNHc Note: nucleases Location: 11214-11352 bp Feature: domain Description: HNHc Note: nucleases Location: 11214-11352 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TrbL (pfam04610), CwlT_like, RVT-GII, HNHc (smart00507)

Seq: LDEU01000068.1 Bacillus thuringiensis strain BMB3201 BMB3201_contig000068, whole genome shotgun sequence (17974 bp)
Overview 1 RT 1: 9851-17972 bp Neighborhood of RT #1 [9851, 17972] RVT-GII Intron_maturas2 HNHc RVT-GII HNHc Feature: gene Location: 9851-10240 bp Feature: gene Location: 10258-11403 bp Feature: gene Location: 12004-13827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12274-13102 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12274-13102 bp Feature: domain Description: Intron_maturas2 Location: 13174-13492 bp Feature: domain Description: Intron_maturas2 Location: 13174-13492 bp Feature: domain Description: HNHc Note: nucleases Location: 13645-13798 bp Feature: domain Description: HNHc Note: nucleases Location: 13645-13798 bp Feature: gene Location: 13966-14112 bp Feature: gene Location: 14794-16584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15091-15787 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15091-1578 7 bp Feature: domain Description: HNHc Note: nucleases Location: 16327-16459 bp Feature: domain Description: HNHc Note: nucleases Location: 16327-16459 bp Feature: gene Location: 16704-17087 bp Feature: gene Location: 17760-17972 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: LDEU01000091.1 Bacillus thuringiensis strain BMB3201 BMB3201_contig000091, whole genome shotgun sequence (32363 bp)
Overview 1 RT 1: 24615-30967 bp Neighborhood of RT #1 [24615, 30987] KOG1000 KOG1000 RVT-GII GIIM PRK09183 Feature: gene Location: 24615-25328 bp Feature: gene Location: 25345-27747 bp Feature: domain Description: KOG1000 Location: 26053-26269 bp Feature: domain Description: KOG1000 Location: 26053-26269 bp Feature: domain Description: KOG1000 Location: 26872-27205 bp Feature: domain Description: KOG1000 Location: 26872-27205 bp Feature: gene Location: 28025-29890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28325-29030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28325-29 030 bp Feature: domain Description: GIIM Note: maturase Location: 29117-29300 bp Feature: domain Description: GIIM Note: maturase Location: 29 117-29 300 bp Feature: gene Location: 30098-30226 bp Feature: gene Location: 30235-30987 bp Feature: domain Description: PRK09183 Location: 30241-30967 bp Feature: domain Description: PRK09 183 Location: 30241-309 67 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), RVT-GII, GIIM (pfam08388), PRK09183 (transposase/IS protein; Provisional)

Seq: LDEU01000094.1 Bacillus thuringiensis strain BMB3201 BMB3201_contig000094, whole genome shotgun sequence (21724 bp)
Overview 1 RT 1: 100-3671 bp Neighborhood of RT #1 [100, 3874] RVT-GII HNHc DNA_BRE_C HTH_XRE Feature: gene Location: 100-1869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 358-1054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 358-10 54 bp Feature: domain Description: HNHc Note: nucleases Location: 1615-1753 bp Feature: domain Description: HNHc Note: nucleases Location: 1615-1753 bp Feature: gene Location: 2695-3369 bp Feature: domain Description: DNA_BRE_C Location: 2860-3352 bp Feature: domain Description: DNA_BRE_C Location: 2860-3352 bp Feature: gene Location: 3479-3874 bp Feature: domain Description: HTH_XRE Location: 3500-3671 bp Feature: domain Description: HTH_XRE Location: 3500-3671 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), DNA_BRE_C (cl00213), HTH_XRE (smart00530)

Seq: LDEU01000095.1 Bacillus thuringiensis strain BMB3201 BMB3201_contig000095, whole genome shotgun sequence (149158 bp)
Overview 1 RT 1: 100-4618 bp Neighborhood of RT #1 [100, 4698] RVT-GII HNHc ETR_like Ntn_PVA Feature: gene Location: 100-1869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 358-1054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 358-1054 bp Feature: domain Description: HNHc Note: nucleases Location: 1615-1753 bp Feature: domain Description: HNHc Note: nucleases Location: 1615-1753 bp Feature: gene Location: 2579-3562 bp Feature: domain Description: ETR_like Location: 2600-3536 bp Feature: domain Description: ETR_like Location: 2600-3536 bp Feature: gene Location: 3712-4698 bp Feature: domain Description: Ntn_PVA Location: 3718-4618 bp Feature: domain Description: Ntn_PVA Location: 3718-4618 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), ETR_like (cd05282), Ntn_PVA (cd00542)

Seq: LDEU01000096.1 Bacillus thuringiensis strain BMB3201 BMB3201_contig000096, whole genome shotgun sequence (5369 bp)
Overview 1 RT 1: 740-3077 bp Neighborhood of RT #1 [740, 3077] RVT-GII HNHc Phage_int_SAM_1 Feature: gene Location: 740-2509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 998-1694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 998-1694 bp Feature: domain Description: HNHc Note: nucleases Location: 2255-2393 bp Feature: domain Description: HNHc Note: nucleases Location: 2255-2393 bp Feature: gene Location: 2593-2793 bp Feature: domain Description: Phage_int_SAM_1 Location: 2626-2776 bp Feature: domain Description: Phage_int_SAM_1 Location: 2626-2776 bp Feature: gene Location: 2934-3077 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_1 (pfam02899), RVT-GII, HNHc (smart00507)

Seq: LDEU01000097.1 Bacillus thuringiensis strain BMB3201 BMB3201_contig000097, whole genome shotgun sequence (34766 bp)
Overview 1 RT 1: 740-4668 bp Neighborhood of RT #1 [740, 4697] RVT-GII HNHc FadR CynX Feature: gene Location: 740-2509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 998-1694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 998-1694 bp Feature: domain Description: HNHc Note: nucleases Location: 2255-2393 bp Feature: domain Description: HNHc Note: nucleases Location: 2255-2393 bp Feature: gene Location: 2717-3436 bp Feature: domain Description: FadR Location: 2789-3422 bp Feature: domain Description: FadR Location: 2789-3422 bp Feature: gene Location: 3507-4697 bp Feature: domain Description: CynX Location: 3522-4668 bp Feature: domain Description: CynX Location: 3522-4668 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FadR (COG2186), CynX (TIGR00896), RVT-GII, HNHc (smart00507)

Seq: LDEU01000098.1 Bacillus thuringiensis strain BMB3201 BMB3201_contig000098, whole genome shotgun sequence (7754 bp)
Overview 1 RT 1: 740-6317 bp Neighborhood of RT #1 [740, 6376] RVT-GII HNHc CwlT_like RVT-GII Intron_maturas2 HNHc NlpD Spr Feature: gene Location: 740-2509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 998-1694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 998-1694 bp Feature: domain Description: HNHc Note: nucleases Location: 2255-2393 bp Feature: domain Description: HNHc Note: nucleases Location: 2255-2393 bp Feature: gene Location: 2625-2942 bp Feature: domain Description: CwlT_like Location: 2667-2931 bp Feature: domain Description: CwlT_like Location: 2667-2931 bp Feature: gene Location: 3518-5341 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3782-4616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3782-4616 bp Feature: domain Description: Intron_maturas2 Location: 4685-5024 bp Feature: domain Description: Intron_maturas2 Location: 4685-5024 bp Feature: domain Description: HNHc Note: nucleases Location: 5162-5318 bp Feature: domain Description: HNHc Note: nucleases Location: 5162-5318 bp Feature: gene Location: 5343-5477 bp Feature: gene Location: 5501-6376 bp Feature: domain Description: NlpD Location: 5516-5945 bp Feature: domain Description: NlpD Location: 5516-5945 bp Feature: domain Description: Spr Location: 5981-6317 bp Feature: domain Description: Spr Location: 5981-6317 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CwlT_like, RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), NlpD (COG0739), Spr (COG0791)

Seq: LDEU01000106.1 Bacillus thuringiensis strain BMB3201 BMB3201_contig000106, whole genome shotgun sequence (7650 bp)
Overview 1 RT 1: 613-7641 bp Neighborhood of RT #1 [613, 7649] RVT-GII Intron_maturas2 HNHc RVT-GII HNHc RVT-GII GIIM Feature: gene Location: 613-2436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 883-1711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 883-1711 bp Feature: domain Description: Intron_maturas2 Location: 1783-2101 bp Feature: domain Description: Intron_maturas2 Location: 1783-2101 bp Feature: domain Description: HNHc Note: nucleases Location: 2254-2407 bp Feature: domain Description: HNHc Note: nucleases Location: 2254-2407 bp Feature: gene Location: 2575-2721 bp Feature: gene Location: 3403-5193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3700-4396 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3700-4396 bp Feature: domain Description: HNHc Note: nucleases Location: 4936-5068 bp Feature: domain Description: HNHc Note: nucleases Location: 4936-5068 bp Feature: gene Location: 5259-5696 bp Feature: gene Location: 6369-7649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6669-7374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6669-7374 bp Feature: domain Description: GIIM Note: maturase Location: 7488-7641 bp Feature: domain Description: GIIM Note: maturase Location: 7488-7641 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), Intron_maturas2 (pfam01348), GIIM (pfam08388)

Seq: LDEU01000107.1 Bacillus thuringiensis strain BMB3201 BMB3201_contig000107, whole genome shotgun sequence (7650 bp)
Overview 1 RT 1: 613-7641 bp Neighborhood of RT #1 [613, 7649] RVT-GII Intron_maturas2 HNHc RVT-GII HNHc RVT-GII GIIM Feature: gene Location: 613-2436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 883-1711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 883-1711 bp Feature: domain Description: Intron_maturas2 Location: 1783-2101 bp Feature: domain Description: Intron_maturas2 Location: 1783-2101 bp Feature: domain Description: HNHc Note: nucleases Location: 2254-2407 bp Feature: domain Description: HNHc Note: nucleases Location: 2254-2407 bp Feature: gene Location: 2575-2721 bp Feature: gene Location: 3403-5193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3700-4396 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3700-4396 bp Feature: domain Description: HNHc Note: nucleases Location: 4936-5068 bp Feature: domain Description: HNHc Note: nucleases Location: 4936-5068 bp Feature: gene Location: 5259-5696 bp Feature: gene Location: 6369-7649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6669-7374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6669-7374 bp Feature: domain Description: GIIM Note: maturase Location: 7488-7641 bp Feature: domain Description: GIIM Note: maturase Location: 7488-7641 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), Intron_maturas2 (pfam01348), GIIM (pfam08388)

Seq: LDEU01000109.1 Bacillus thuringiensis strain BMB3201 BMB3201_contig000109, whole genome shotgun sequence (1614 bp)
Overview 1 RT 1: 235-1537 bp Neighborhood of RT #1 [235, 1611] RVT-GII GIIM HNHc Feature: gene Location: 235-1611 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241-742 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241-742 bp Feature: domain Description: GIIM Note: maturase Location: 856-1021 bp Feature: domain Description: GIIM Note: maturase Location: 856-1021 bp Feature: domain Description: HNHc Note: nucleases Location: 1369-1537 bp Feature: domain Description: HNHc Note: nucleases Location: 1369-1537 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: LDEU01000111.1 Bacillus thuringiensis strain BMB3201 BMB3201_contig000111, whole genome shotgun sequence (32190 bp)
Overview 1 RT 1: 11437-17188 bp Neighborhood of RT #1 [11437, 17217] RVT-GII HNHc LPD1 DUF3854 Feature: gene Location: 11437-12528 bp Feature: gene Location: 12893-13075 bp Feature: gene Location: 13249-15045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13543-14239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13543-14239 bp Feature: domain Description: HNHc Note: nucleases Location: 14839-14914 bp Feature: domain Description: HNHc Note: nucleases Location: 14839-14914 bp Feature: gene Location: 15117-15914 bp Feature: domain Description: LPD1 Location: 15663-15858 bp Feature: domain Description: LPD1 Location: 15663-15858 bp Feature: gene Location: 15904-17217 bp Feature: domain Description: DUF3854 Location: 16849-17188 bp Feature: domain Description: DUF3854 Location: 16849-1718 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), LPD1 (pfam18796), DUF3854 (pfam12965)

Seq: LDEU01000116.1 Bacillus thuringiensis strain BMB3201 BMB3201_contig000116, whole genome shotgun sequence (7754 bp)
Overview 1 RT 1: 1379-6899 bp Neighborhood of RT #1 [1379, 7015] NlpD Spr RVT-GII Intron_maturas2 HNHc CwlT_like RVT-GII HNHc Feature: gene Location: 1379-2254 bp Feature: domain Description: NlpD Location: 1394-1823 bp Feature: domain Description: NlpD Location: 1394-1823 bp Feature: domain Description: Spr Location: 1859-2195 bp Feature: domain Description: Spr Location: 1859-219 5 bp Feature: gene Location: 2278-2412 bp Feature: gene Location: 2414-4237 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2678-3512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2678-3512 bp Feature: domain Description: Intron_maturas2 Location: 3581-3920 bp Feature: domain Description: Intron_maturas2 Location: 3581-3920 bp Feature: domain Description: HNHc Note: nucleases Location: 4058-4214 bp Feature: domain Description: HNHc Note: nucleases Location: 4058-4214 bp Feature: gene Location: 4813-5130 bp Feature: domain Description: CwlT_like Location: 4855-5119 bp Feature: domain Description: CwlT_like Location: 4855-5119 bp Feature: gene Location: 5246-7015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5504-6200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5504-6200 bp Feature: domain Description: HNHc Note: nucleases Location: 6761-6899 bp Feature: domain Description: HNHc Note: nucleases Location: 6761-6899 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NlpD (COG0739), Spr (COG0791), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), CwlT_like

Seq: LDEU01000117.1 Bacillus thuringiensis strain BMB3201 BMB3201_contig000117, whole genome shotgun sequence (9699 bp)
Overview 1 RT 1: 390-3189 bp Neighborhood of RT #1 [390, 3248] RVT-GII Intron_maturas2 HNHc NlpD Spr Feature: gene Location: 390-2213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 654-1488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 654-1488 bp Feature: domain Description: Intron_maturas2 Location: 1557-1896 bp Feature: domain Description: Intron_maturas2 Location: 1557-1896 bp Feature: domain Description: HNHc Note: nucleases Location: 2034-2190 bp Feature: domain Description: HNHc Note: nucleases Location: 20 34-2190 bp Feature: gene Location: 2215-2349 bp Feature: gene Location: 2373-3248 bp Feature: domain Description: NlpD Location: 2388-2817 bp Feature: domain Description: NlpD Location: 2388-2817 bp Feature: domain Description: Spr Location: 2853-3189 bp Feature: domain Description: Spr Location: 2853-3189 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NlpD (COG0739), Spr (COG0791), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: LDEU01000138.1 Bacillus thuringiensis strain BMB3201 BMB3201_contig000138, whole genome shotgun sequence (6534 bp)
Overview 1 RT 1: 3540-6368 bp Neighborhood of RT #1 [3540, 6368] OmpR RVT-GII GIIM Feature: gene Location: 3540-4214 bp Feature: domain Description: OmpR Location: 3549-4203 bp Feature: domain Description: OmpR Location: 3549-4203 bp Feature: gene Location: 4359-4619 bp Feature: gene Location: 4708-6039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5017-5656 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5017-5656 bp Feature: domain Description: GIIM Note: maturase Location: 5731-5956 bp Feature: domain Description: GIIM Note: maturase Location: 5731-5956 bp Feature: gene Location: 6189-6368 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OmpR (COG0745), RVT-GII, GIIM (pfam08388)

Seq: LDEU01000156.1 Bacillus thuringiensis strain BMB3201 BMB3201_contig000156, whole genome shotgun sequence (61517 bp)
Overview 1 RT 1: 12677-21080 bp Neighborhood of RT #1 [12677, 21080] RVT-GII HNHc T4SS-DNA_transf T4SS-DNA_transf Feature: gene Location: 12677-13357 bp Feature: gene Location: 13555-13788 bp Feature: gene Location: 14076-15905 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14376-15078 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14376-15078 bp Feature: domain Description: HNHc Note: nucleases Location: 15657-15789 bp Feature: domain Description: HNHc Note: nucleases Location: 15657-15789 bp Feature: gene Location: 16106-17995 bp Feature: domain Description: T4SS-DNA_transf Location: 16115-16598 bp Feature: domain Description: T4SS-DNA_transf Location: 16115-16598 bp Feature: domain Description: T4SS-DNA_transf Location: 16988-17504 bp Feature: domain Description: T4SS-DNA_transf Location: 16988-17504 bp Feature: gene Location: 18027-21080 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), T4SS-DNA_transf (pfam02534)

Seq: LDEU01000166.1 Bacillus thuringiensis strain BMB3201 BMB3201_contig000166, whole genome shotgun sequence (28909 bp)
Overview 1 RT 1: 3-8205 bp Neighborhood of RT #1 [3, 8205] RVT-GII HNHc RVT-GII Intron_maturas2 HNHc Feature: gene Location: 3-215 bp Feature: gene Location: 888-1271 bp Feature: gene Location: 1391-3181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1688-2384 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1688-23 84 bp Feature: domain Description: HNHc Note: nucleases Location: 2924-3056 bp Feature: domain Description: HNHc Note: nucleases Location: 2924-3056 bp Feature: gene Location: 3863-4009 bp Feature: gene Location: 4148-5971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4418-5246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4418-5246 bp Feature: domain Description: Intron_maturas2 Location: 5318-5636 bp Feature: domain Description: Intron_maturas2 Location: 5318-5636 bp Feature: domain Description: HNHc Note: nucleases Location: 5789-5942 bp Feature: domain Description: HNHc Note: nucleases Location: 5789-5942 bp Feature: gene Location: 6572-7717 bp Feature: gene Location: 7735-8205 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), Intron_maturas2 (pfam01348)