myRT

myRT report for GCA_001276475.1_ASM127647v1

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Seq: LDWB01000111.1 Pseudomonas stutzeri strain C2 contig219, whole genome shotgun sequence (1926 bp)
Overview 1 RT 1: 433-1687 bp Neighborhood of RT #1 [433, 1854] RVT-GII GIIM Feature: gene Location: 433-1854 bp Ori: KOR04996.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 790-1405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 790-1 405 bp Feature: domain Description: GIIM Note: maturase Location: 1459-1687 bp Feature: domain Description: GIIM Note: maturase Location: 1 459-1 687 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LDWB01000002.1 Pseudomonas stutzeri strain C2 contig437, whole genome shotgun sequence (185905 bp)
Overview 1 RT 1: 20428-24687 bp Neighborhood of RT #1 [20428, 24746] RVT-UG2 DEAH_box_HrpB Feature: gene Location: 20428-20619 bp Feature: gene Location: 21167-21895 bp Feature: gene Location: 22524-23807 bp Ori: KOR11216.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 22716-23502 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 2 2 716-2 3502 bp Feature: gene Location: 23955-24170 bp Feature: gene Location: 24303-24746 bp Ori: KOR11218.1 Feature: domain Description: DEAH_box_HrpB Location: 24315-24687 bp Feature: domain Description: DEAH_box_HrpB Location: 2 4315-2 4687 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2, DEAH_box_HrpB (TIGR01970)

Seq: LDWB01000039.1 Pseudomonas stutzeri strain C2 contig363, whole genome shotgun sequence (43140 bp)
Overview 1 RT 1: 15439-23445 bp Neighborhood of RT #1 [15439, 23471] PRK00153 PRK07994 RVT_N RVT-GII YkfC HNHc PRK00257 PRK01766 Feature: gene Location: 15439-15765 bp Ori: KOR08534.1 Feature: domain Description: PRK00153 Location: 15445-15757 bp Feature: domain Description: PRK00153 Location: 15445-15757 bp Feature: gene Location: 15785-17803 bp Ori: KOR08535.1 Feature: domain Description: PRK07994 Location: 15788-17786 bp Feature: domain Description: PRK07994 Location: 15788-17786 bp Feature: gene Location: 17956-19695 bp Ori: KOR08536.1 Feature: domain Description: RVT_N Location: 18016-18259 bp Feature: domain Description: RVT_N Location: 18016-18259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18307-18958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 183 07-18958 bp Feature: domain Description: YkfC Location: 19123-19321 bp Feature: domain Description: YkfC Location: 19123 -193 21 bp Feature: domain Description: HNHc Note: nucleases Location: 19492-19648 bp Feature: domain Description: HNHc Note: nucleases Location: 19492-19648 bp Feature: gene Location: 20810-21955 bp Ori: KOR08537.1 Feature: domain Description: PRK00257 Location: 20813-21947 bp Feature: domain Description: PRK00257 Location: 20813 -21947 bp Feature: gene Location: 22077-23471 bp Ori: KOR08538.1 Feature: domain Description: PRK01766 Location: 22101-23445 bp Feature: domain Description: PRK01766 Location: 22101-23 445 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00153 (YbaB/EbfC family nucleoid-associated protein), PRK07994 (DNA polymerase III subunits gamma and tau; Validated), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), PRK00257 (4-phosphoerythronate dehydrogenase PdxB), PRK01766 (multidrug efflux protein; Reviewed)