myRT

myRT report for GCA_001276615.1_ASM127661v1

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Seq: JXSO01000312.1 Achromatium sp. WMS3 contig-199_313, whole genome shotgun sequence (3611 bp)
Overview 1 RT 1: 244-2402 bp Neighborhood of RT #1 [244, 2455] SPFH_eoslipins_u2 SPFH_eoslipins_u2 RVT-GII GIIM Feature: gene Location: 244-1074 bp Ori: KOR31628.1 Feature: domain Description: SPFH_eoslipins_u2 Location: 274-829 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 274-829 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 841-1015 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 841 -1 01 5 bp Feature: gene Location: 1292-2455 bp Ori: KOR31629.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1508-2129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 508-21 29 bp Feature: domain Description: GIIM Note: maturase Location: 2168-2402 bp Feature: domain Description: GIIM Note: maturase Location: 21 68-2402 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SPFH_eoslipins_u2 (cd13438), RVT-GII, GIIM (pfam08388)

Seq: JXSO01000015.1 Achromatium sp. WMS3 contig-199_14, whole genome shotgun sequence (19290 bp)
Overview 1 RT 1: 58-4794 bp Neighborhood of RT #1 [58, 4805] nit RVT-GII PleD VicK OmpA_C-like Feature: gene Location: 58-891 bp Ori: KOR33354.1 Feature: domain Description: nit Location: 79-874 bp Feature: domain Description: nit Location: 79-874 bp Feature: gene Location: 1107-1340 bp Ori: KOR33355.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1176-1323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1176-132 3 bp Feature: gene Location: 1905-3014 bp Ori: KOR33356.1 Feature: domain Description: PleD Location: 1917-2334 bp Feature: domain Description: PleD Location: 1917-2 334 bp Feature: domain Description: VicK Location: 2343-3006 bp Feature: domain Description: VicK Location: 2 343-3006 bp Feature: gene Location: 3027-4805 bp Ori: KOR33357.1 Feature: domain Description: OmpA_C-like Location: 4488-4794 bp Feature: domain Description: OmpA_C-like Location: 4488-4794 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT nit (cd07572), RVT-GII, PleD (COG3706), VicK (COG5002), OmpA_C-like (cl30079)

Seq: JXSO01000046.1 Achromatium sp. WMS3 contig-199_45, whole genome shotgun sequence (13507 bp)
Overview 1 RT 1: 912-7204 bp Neighborhood of RT #1 [912, 7218] pfam00656 YfmG HRDC RVT-DGRs PDDEXK_2 ALAD_PBGS_aspartate_rich Feature: gene Location: 912-3077 bp Ori: KOR33012.1 Feature: domain Description: pfam00656 Location: 1122-1788 bp Feature: domain Description: pfam00656 Location: 1122-1788 bp Feature: domain Description: YfmG Location: 2085-3063 bp Feature: domain Description: YfmG Location: 2085-3 063 bp Feature: gene Location: 3265-3762 bp Ori: KOR33013.1 Feature: domain Description: HRDC Location: 3508-3697 bp Feature: domain Description: HRDC Location: 3 508-3 697 bp Feature: gene Location: 3707-4774 bp Ori: KOR33014.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3974-4616 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 974-4616 bp Feature: gene Location: 5199-6080 bp Ori: KOR33015.1 Feature: domain Description: PDDEXK_2 Location: 5241-5919 bp Feature: domain Description: PDDEXK_2 Location: 5241-5919 bp Feature: gene Location: 6205-7218 bp Ori: KOR33016.1 Feature: domain Description: ALAD_PBGS_aspartate_rich Location: 6241-7204 bp Feature: domain Description: ALAD_PBGS_aspartate_rich Location: 6241-7204 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pfam00656 (Peptidase_C14;Caspase domain), YfmG (COG1262), HRDC (smart00341), RVT-DGRs, PDDEXK_2 (pfam12784), ALAD_PBGS_aspartate_rich (cd04823)