myRT

myRT report for GCA_001276715.1_ASM127671v1

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Seq: LIUQ01000013.1 Planktothricoides sp. SR001 contig_50, whole genome shotgun sequence (131064 bp)
Overview 1 RT 1: 623-4486 bp Neighborhood of RT #1 [623, 4518] RVT_N RVT-GII GIIM McrA DUF3611 ycf39 Feature: gene Location: 623-2368 bp Feature: RT Description: RVT_N Location: 659-905 bp Feature: RT Description: RVT_N Location: 659-905 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 947-1637 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 947-1 637 bp Feature: domain Description: GIIM Note: maturase Location: 1739-1970 bp Feature: domain Description: GIIM Note: maturase Location: 1 739-1 970 bp Feature: domain Description: McrA Location: 2057-2348 bp Feature: domain Description: McrA Location: 2057-2348 bp Feature: gene Location: 2523-3119 bp Feature: domain Description: DUF3611 Location: 2556-3102 bp Feature: domain Description: DUF361 1 Location: 2556-31 02 bp Feature: gene Location: 3544-4518 bp Feature: domain Description: ycf39 Location: 3547-4486 bp Feature: domain Description: ycf39 Location: 3547-4486 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3611 (pfam12263), ycf39 (CHL00194), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: LIUQ01000138.1 Planktothricoides sp. SR001 contig_84, whole genome shotgun sequence (2020 bp)
Overview 1 RT 1: 631-1879 bp Neighborhood of RT #1 [631, 2020] RVT_N RVT-GII GIIM Feature: gene Location: 631-2020 bp Feature: RT Description: RVT_N Location: 682-925 bp Feature: RT Description: RVT_N Location: 682 -92 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 967-1594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 967-1594 bp Feature: domain Description: GIIM Note: maturase Location: 1651-1879 bp Feature: domain Description: GIIM Note: maturase Location: 1651-1879 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: LIUQ01000015.1 Planktothricoides sp. SR001 contig_16, whole genome shotgun sequence (123385 bp)
Overview 1 RT 1: 6627-11571 bp Neighborhood of RT #1 [6627, 11687] PIN_VapC4-5_FitB-like VAPB_antitox RVT_N RVT-GII GIIM McrA AR_FR_like_1_SDR_e NDUFA9_like_SDR_a Feature: gene Location: 6627-7037 bp Feature: domain Description: PIN_VapC4-5_FitB-like Location: 6642-7005 bp Feature: domain Description: PIN_VapC4-5_FitB-like Location: 6642-7005 bp Feature: gene Location: 7034-7297 bp Feature: domain Description: VAPB_antitox Location: 7082-7259 bp Feature: domain Description: VAPB_antitox Location: 7082-7259 bp Feature: gene Location: 8061-9797 bp Feature: RT Description: RVT_N Location: 8097-8343 bp Feature: RT Description: RVT_N Location: 8097-83 43 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8385-9060 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83 85-9060 bp Feature: domain Description: GIIM Note: maturase Location: 9183-9399 bp Feature: domain Description: GIIM Note: maturase Location: 9183 -93 99 bp Feature: domain Description: McrA Location: 9483-9777 bp Feature: domain Description: McrA Location: 9483 -9777 bp Feature: gene Location: 10576-10767 bp Feature: gene Location: 10770-11687 bp Feature: domain Description: AR_FR_like_1_SDR_e Location: 10806-11031 bp Feature: domain Description: AR_FR_like_1_SDR_e Location: 10806-1103 1 bp Feature: domain Description: NDUFA9_like_SDR_a Location: 11070-11571 bp Feature: domain Description: NDUFA9_like_SDR_a Location: 11070-11571 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AR_FR_like_1_SDR_e (cd05228), NDUFA9_like_SDR_a (cd05271), PIN_VapC4-5_FitB-like (cd18754), VAPB_antitox (pfam02697), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: LIUQ01000130.1 Planktothricoides sp. SR001 contig_47, whole genome shotgun sequence (2565 bp)
Overview 1 RT 1: 112-1822 bp Neighborhood of RT #1 [112, 1845] RVT_N RVT-GII GIIM McrA Feature: gene Location: 112-1845 bp Feature: RT Description: RVT_N Location: 148-394 bp Feature: RT Description: RVT_N Location: 14 8-394 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 436-1108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 36-1108 bp Feature: domain Description: GIIM Note: maturase Location: 1216-1447 bp Feature: domain Description: GIIM Note: maturase Location: 1216-14 4 7 bp Feature: domain Description: McrA Location: 1531-1822 bp Feature: domain Description: McrA Location: 1531-1822 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: LIUQ01000128.1 Planktothricoides sp. SR001 contig_46, whole genome shotgun sequence (2767 bp)
Overview 1 RT 1: 1-1966 bp Neighborhood of RT #1 [1, 1989] HemolysinCabind RVT_N RVT-GII GIIM McrA Feature: gene Location: 1-118 bp Feature: domain Description: HemolysinCabind Location: 10-112 bp Feature: domain Description: HemolysinCabind Location: 10-112 bp Feature: gene Location: 256-1989 bp Feature: RT Description: RVT_N Location: 292-538 bp Feature: RT Description: RVT_N Location: 292-5 38 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 580-1252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 80-125 2 bp Feature: domain Description: GIIM Note: maturase Location: 1360-1591 bp Feature: domain Description: GIIM Note: maturase Location: 1360-15 91 bp Feature: domain Description: McrA Location: 1675-1966 bp Feature: domain Description: McrA Location: 1675 -1966 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HemolysinCabind (pfam00353), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: LIUQ01000030.1 Planktothricoides sp. SR001 contig_33, whole genome shotgun sequence (81723 bp)
Overview 1 RT 1: 29630-33456 bp Neighborhood of RT #1 [29630, 33482] FHA Avd_like RVT-DGRs YfmG Feature: gene Location: 29630-30379 bp Feature: domain Description: FHA Location: 29657-29924 bp Feature: domain Description: FHA Location: 296 57-29924 bp Feature: gene Location: 30429-30785 bp Feature: domain Description: Avd_like Location: 30447-30753 bp Feature: domain Description: Avd_like Location: 30447-30753 bp Feature: gene Location: 30820-31875 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31027-31717 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31027-31717 bp Feature: gene Location: 31936-32145 bp Feature: gene Location: 32517-33482 bp Feature: domain Description: YfmG Location: 32640-33456 bp Feature: domain Description: YfmG Location: 326 40-33456 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FHA (smart00240), Avd_like (cd16376), RVT-DGRs, YfmG (COG1262)

Seq: LIUQ01000132.1 Planktothricoides sp. SR001 contig_49, whole genome shotgun sequence (2481 bp)
Overview 1 RT 1: 39-1746 bp Neighborhood of RT #1 [39, 1766] RVT_N RVT-GII GIIM McrA Feature: gene Location: 39-1766 bp Feature: RT Description: RVT_N Location: 75-321 bp Feature: RT Description: RVT_N Location: 7 5-321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 363-1035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 363-1035 bp Feature: domain Description: GIIM Note: maturase Location: 1140-1368 bp Feature: domain Description: GIIM Note: maturase Location: 1140-1368 bp Feature: domain Description: McrA Location: 1455-1746 bp Feature: domain Description: McrA Location: 1455-17 46 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)