myRT

myRT report for GCA_001277715.1_7790_1_58

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Seq: CYBO01000003.1 Escherichia coli genome assembly 7790_1#58, scaffold ERS085391SCcontig000003, whole genome shotgun sequence (272737 bp)
Overview 1 RT 1: 263238-270313 bp Neighborhood of RT #1 [263238, 270315] SLATT_5 RVT-UG17 phage_tail_N Collar Ail_Lom Feature: gene Location: 263238-263336 bp Feature: gene Location: 263702-264253 bp Ori: CTT98136.1 Feature: domain Description: SLATT_5 Location: 263711-264224 bp Feature: domain Description: SLATT_5 Location: 26371 1 -264224 bp Feature: gene Location: 264231-265601 bp Ori: CTT98147.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 264459-265065 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 264459-265065 bp Feature: gene Location: 266298-269699 bp Ori: CTT98159.1 Feature: domain Description: phage_tail_N Location: 266301-266700 bp Feature: domain Description: phage_tail_N Location: 266301 -266700 bp Feature: domain Description: Collar Location: 269019-269157 bp Feature: domain Description: Collar Location: 26901 9-2691 57 bp Feature: gene Location: 269764-270315 bp Ori: CTT98170.1 Gene: ompX_1 Feature: domain Description: Ail_Lom Location: 269767-270313 bp Feature: domain Description: Ail_Lom Location: 269767-27031 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, phage_tail_N (pfam08400), Collar (pfam07484), Ail_Lom (pfam06316)

Seq: CYBO01000033.1 Escherichia coli genome assembly 7790_1#58, scaffold ERS085391SCcontig000033, whole genome shotgun sequence (37184 bp)
Overview 1 RT 1: 15530-20849 bp Neighborhood of RT #1 [15530, 20875] YesM RVT-GII GIIM RVT-GII PFLE_PFLC Feature: gene Location: 15530-16759 bp Ori: CTU32164.1 Gene: ypdA_2 Feature: domain Description: YesM Location: 16010-16751 bp Feature: domain Description: YesM Location: 16010-16751 bp Feature: gene Location: 16832-17020 bp Feature: gene Location: 17342-17824 bp Ori: CTU32183.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17351-17591 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17351-17591 bp Feature: domain Description: GIIM Note: maturase Location: 17639-17819 bp Feature: domain Description: GIIM Note: maturase Location: 17639-17819 bp Feature: gene Location: 17891-18430 bp Ori: CTU32192.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18221-18299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 182 2 1-182 99 bp Feature: gene Location: 18916-19821 bp Feature: gene Location: 19958-20875 bp Ori: CTU32205.1 Gene: hpdA Feature: domain Description: PFLE_PFLC Location: 19994-20849 bp Feature: domain Description: PFLE_PFLC Location: 19994-2 0849 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388), PFLE_PFLC (TIGR02494)

Seq: CYBO01000085.1 Escherichia coli genome assembly 7790_1#58, scaffold ERS085391SCcontig000085, whole genome shotgun sequence (2832 bp)
Overview 1 RT 1: 491-1910 bp Neighborhood of RT #1 [491, 1910] RVT-GII GIIM HNHc Feature: gene Location: 491-1765 bp Ori: CTU40334.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 494-1076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 494-1076 bp Feature: domain Description: GIIM Note: maturase Location: 1127-1361 bp Feature: domain Description: GIIM Note: maturase Location: 1127-13 61 bp Feature: domain Description: HNHc Note: nucleases Location: 1571-1730 bp Feature: domain Description: HNHc Note: nucleases Location: 1571-173 0 bp Feature: gene Location: 1713-1910 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507)