myRT

myRT report for GCA_001280585.1_ASM128058v1

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Seq: LGUJ01000074.1 Bradyrhizobium diazoefficiens strain Is-1 contig_74, whole genome shotgun sequence (1878 bp)
Overview 1 RT 1: 422-1628 bp Neighborhood of RT #1 [422, 1798] RVT-GII GIIM Feature: gene Location: 422-1798 bp Ori: KOY04607.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 749-1367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 749-1 367 bp Feature: domain Description: GIIM Note: maturase Location: 1418-1628 bp Feature: domain Description: GIIM Note: maturase Location: 1 41 8-1 628 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LGUJ01000029.1 Bradyrhizobium diazoefficiens strain Is-1 contig_29, whole genome shotgun sequence (65664 bp)
Overview 1 RT 1: 46031-50943 bp Neighborhood of RT #1 [46031, 51065] RVT-GII GIIM HTH_Tnp_1 Tra5 Feature: gene Location: 46031-46255 bp Feature: gene Location: 46798-47031 bp Feature: gene Location: 48540-49784 bp Ori: KOY05828.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48741-49398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48741-49398 bp Feature: domain Description: GIIM Note: maturase Location: 49476-49704 bp Feature: domain Description: GIIM Note: maturase Location: 49476-49704 bp Feature: gene Location: 49961-50215 bp Ori: KOY05843.1 Feature: domain Description: HTH_Tnp_1 Location: 49967-50174 bp Feature: domain Description: HTH_Tnp_1 Location: 49967-50174 bp Feature: gene Location: 50193-51065 bp Ori: KOY05829.1 Feature: domain Description: Tra5 Location: 50235-50943 bp Feature: domain Description: Tra5 Location: 502 35-50943 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_Tnp_1 (pfam01527), Tra5 (COG2801)

Seq: LGUJ01000043.1 Bradyrhizobium diazoefficiens strain Is-1 contig_43, whole genome shotgun sequence (14147 bp)
Overview 1 RT 1: 6637-12620 bp Neighborhood of RT #1 [6637, 12697] PRK06215 RVT-GII GIIM LptD Feature: gene Location: 6637-7374 bp Ori: KOY05032.1 Feature: domain Description: PRK06215 Location: 6646-7369 bp Feature: domain Description: PRK06215 Location: 6646-73 69 bp Feature: gene Location: 7615-7983 bp Feature: gene Location: 8241-9554 bp Ori: KOY05034.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8526-9183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8526-9183 bp Feature: domain Description: GIIM Note: maturase Location: 9258-9462 bp Feature: domain Description: GIIM Note: maturase Location: 9258-9462 bp Feature: gene Location: 10062-10253 bp Feature: gene Location: 10271-12697 bp Ori: KOY05038.1 Feature: domain Description: LptD Location: 10430-12620 bp Feature: domain Description: LptD Location: 1043 0-12620 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06215 (hypothetical protein; Provisional), RVT-GII, GIIM (pfam08388), LptD (COG1452)

Seq: LGUJ01000049.1 Bradyrhizobium diazoefficiens strain Is-1 contig_49, whole genome shotgun sequence (8117 bp)
Overview 1 RT 1: 3597-6707 bp Neighborhood of RT #1 [3597, 6707] MmsB RVT-GII RVT-GII RVT-GII DDE_Tnp_1_4 Feature: gene Location: 3597-3761 bp Ori: KOY04854.1 Feature: domain Description: MmsB Location: 3609-3720 bp Feature: domain Description: MmsB Location: 3609-3720 bp Feature: gene Location: 3762-4091 bp Feature: gene Location: 4098-4658 bp Ori: KOY04856.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4506-4584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 506-4 584 bp Feature: gene Location: 4663-4857 bp Ori: KOY04857.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4693-4846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 693-4 84 6 bp Feature: gene Location: 4890-5576 bp Ori: KOY04858.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4893-5199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 893-5199 bp Feature: gene Location: 5675-6130 bp Ori: KOY04859.1 Feature: domain Description: DDE_Tnp_1_4 Location: 5711-5885 bp Feature: domain Description: DDE_Tnp_1_4 Location: 5711-5885 bp Feature: gene Location: 6303-6707 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MmsB (COG2084), RVT-GII, DDE_Tnp_1_4 (pfam13701)

Seq: LGUJ01000028.1 Bradyrhizobium diazoefficiens strain Is-1 contig_28, whole genome shotgun sequence (46998 bp)
Overview 1 RT 1: 80-5868 bp Neighborhood of RT #1 [80, 5918] RVT-GII COG3464 COG3464 COG3547 Feature: gene Location: 80-1555 bp Ori: KOY05844.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 488-1178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 488-1178 bp Feature: gene Location: 3214-4770 bp Ori: KOY05845.1 Feature: domain Description: COG3464 Location: 3328-3487 bp Feature: domain Description: COG3464 Location: 3328-3487 bp Feature: domain Description: COG3464 Location: 3562-4759 bp Feature: domain Description: COG3464 Location: 35 62-475 9 bp Feature: gene Location: 4899-5918 bp Ori: KOY05846.1 Feature: domain Description: COG3547 Location: 4911-5868 bp Feature: domain Description: COG35 47 Location: 4911-5 868 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, COG3464 (Transposase ), COG3547 (Transposase )