myRT

myRT report for GCA_001280755.1_ASM128075v1

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Seq: LFXS01000001.1 Pseudomonas aeruginosa strain EML528 contig_2, whole genome shotgun sequence (651223 bp)
Overview 1 RT 1: 620490-630786 bp Neighborhood of RT #1 [620490, 630788] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 sensory_box PAS_9 PRK10060 PRK05658 Feature: gene Location: 620490-621611 bp Feature: domain Description: COG3177 Location: 620508-621600 bp Feature: domain Description: COG31 77 Location: 620508-621 600 bp Feature: gene Location: 621873-622022 bp Feature: gene Location: 622325-624010 bp Feature: RT Description: RVT_N Location: 622382-622622 bp Feature: RT Description: RVT_N Location: 622382-622622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 622670-623306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 622670-623306 bp Feature: domain Description: GIIM Note: maturase Location: 623360-623591 bp Feature: domain Description: GIIM Note: maturase Location: 623360-623591 bp Feature: domain Description: HNH Note: nucleases Location: 623843-623981 bp Feature: domain Description: HNH Note: nucleases Location: 623843-623981 bp Feature: gene Location: 625091-628828 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 625199-625856 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 6251 99-625856 bp Feature: domain Description: PRK09776 Location: 626069-626390 bp Feature: domain Description: PRK09776 Location: 626069-626390 bp Feature: domain Description: sensory_box Location: 626399-626759 bp Feature: domain Description: sensory_box Location: 626399-626759 bp Feature: domain Description: PAS_9 Location: 626807-627113 bp Feature: domain Description: PAS_9 Location: 626807-6271 1 3 bp Feature: domain Description: PRK10060 Location: 627131-628778 bp Feature: domain Description: PRK1 0060 Location: 6271 31 -628778 bp Feature: gene Location: 628935-630788 bp Feature: domain Description: PRK05658 Location: 628947-630786 bp Feature: domain Description: PRK05658 Location: 628947-630786 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), sensory_box (TIGR00229), PAS_9 (pfam13426), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated)