myRT

myRT report for GCA_001282125.1_ASM128212v1

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Seq: LIYM01000005.1 Pseudomonas putida strain PCL1760 contig05, whole genome shotgun sequence (259857 bp)
Overview 1 RT 1: 207707-212584 bp Neighborhood of RT #1 [207707, 212601] USP_Like USP_Like Nudix_Hydrolase_27 RVT-GII GIIM DDE_Tnp_IS66 TauE Feature: gene Location: 207707-208468 bp Feature: domain Description: USP_Like Location: 207716-208172 bp Feature: domain Description: USP_Like Location: 20771 6-2081 72 bp Feature: domain Description: USP_Like Location: 208202-208466 bp Feature: domain Description: USP_Like Location: 208202-208466 bp Feature: gene Location: 208651-209184 bp Feature: domain Description: Nudix_Hydrolase_27 Location: 208723-209107 bp Feature: domain Description: Nudix_Hydrolase_27 Location: 208723-2091 07 bp Feature: gene Location: 209474-210643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 209615-210266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20961 5-21 0266 bp Feature: domain Description: GIIM Note: maturase Location: 210344-210548 bp Feature: domain Description: GIIM Note: maturase Location: 21 0344-21 0548 bp Feature: gene Location: 210858-211406 bp Feature: domain Description: DDE_Tnp_IS66 Location: 210861-211368 bp Feature: domain Description: DDE_Tnp_IS66 Location: 21 0861 -21 1 368 bp Feature: gene Location: 211861-212601 bp Feature: domain Description: TauE Location: 211912-212584 bp Feature: domain Description: TauE Location: 21 1 91 2-21 2584 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT USP_Like (cd00293), Nudix_Hydrolase_27 (cd04686), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), TauE (pfam01925)

Seq: LIYM01000007.1 Pseudomonas putida strain PCL1760 contig07, whole genome shotgun sequence (203800 bp)
Overview 1 RT 1: 176254-179969 bp Neighborhood of RT #1 [176254, 179969] MvaT_DBD RVT-GII GIIM ArdC Feature: gene Location: 176254-176619 bp Feature: domain Description: MvaT_DBD Location: 176494-176614 bp Feature: domain Description: MvaT_DBD Location: 176494-176614 bp Feature: gene Location: 176641-176802 bp Feature: gene Location: 177218-178540 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 177476-178091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 177476-178091 bp Feature: domain Description: GIIM Note: maturase Location: 178148-178373 bp Feature: domain Description: GIIM Note: maturase Location: 178148-178373 bp Feature: gene Location: 178622-179560 bp Feature: domain Description: ArdC Location: 178628-179537 bp Feature: domain Description: ArdC Location: 17862 8-179537 bp Feature: gene Location: 179646-179969 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MvaT_DBD (cl40688), RVT-GII, GIIM (pfam08388), ArdC (COG4227)

Seq: LIYM01000022.1 Pseudomonas putida strain PCL1760 contig22, whole genome shotgun sequence (93025 bp)
Overview 1 RT 1: 57694-61891 bp Neighborhood of RT #1 [57694, 61891] RVT-Retrons PRK10717 PRK10717 Feature: gene Location: 57694-57855 bp Feature: gene Location: 57936-58826 bp Feature: gene Location: 58992-60158 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 59247-59862 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 59247-59862 bp Feature: gene Location: 60322-61581 bp Feature: domain Description: PRK10717 Location: 60340-60394 bp Feature: domain Description: PRK10717 Location: 603 40-603 94 bp Feature: domain Description: PRK10717 Location: 60589-60772 bp Feature: domain Description: PRK10717 Location: 60589-60772 bp Feature: gene Location: 61598-61891 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PRK10717 (cysteine synthase A; Provisional)