myRT

myRT report for GCA_001282155.1_ASM128215v1

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Seq: LJGE01000036.1 Escherichia coli strain IMT31351 contig_38, whole genome shotgun sequence (75154 bp)
Overview 1 RT 1: 21956-25839 bp Neighborhood of RT #1 [21956, 25844] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 21956-22672 bp Feature: domain Description: rph Location: 21959-22667 bp Feature: domain Description: rph Location: 21 959-22667 bp Feature: gene Location: 22724-23380 bp Feature: domain Description: pyrE Location: 22742-23375 bp Feature: domain Description: pyrE Location: 22742-23375 bp Feature: gene Location: 23678-24637 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23813-24362 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2381 3-24362 bp Feature: gene Location: 24683-25279 bp Feature: domain Description: slmA Location: 24689-25265 bp Feature: domain Description: slmA Location: 24689-25265 bp Feature: gene Location: 25386-25844 bp Feature: domain Description: dut Location: 25392-25839 bp Feature: domain Description: dut Location: 25392-25839 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: LJGE01000076.1 Escherichia coli strain IMT31351 contig_82, whole genome shotgun sequence (15385 bp)
Overview 1 RT 1: 3-5549 bp Neighborhood of RT #1 [3, 5551] RVT-GII Intron_maturas2 HNHc PRK13709 PRK13700 Feature: gene Location: 3-386 bp Feature: gene Location: 388-594 bp Feature: gene Location: 1272-3173 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1539-2370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1539-2 370 bp Feature: domain Description: Intron_maturas2 Location: 2484-2742 bp Feature: domain Description: Intron_maturas2 Location: 2 484-2 742 bp Feature: domain Description: HNHc Note: nucleases Location: 2916-3078 bp Feature: domain Description: HNHc Note: nucleases Location: 2 916-3078 bp Feature: gene Location: 3255-4451 bp Feature: domain Description: PRK13709 Location: 3261-4155 bp Feature: domain Description: PRK13709 Location: 32 61-4155 bp Feature: gene Location: 4451-5551 bp Feature: domain Description: PRK13700 Location: 4454-5549 bp Feature: domain Description: PRK13700 Location: 4454-5549 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13709 (conjugal transfer nickase/helicase TraI; Provisional)