myRT

myRT report for GCA_001282195.1_ASM128219v1

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Seq: LJGG01000005.1 Escherichia coli strain IMT31359 contig_5, whole genome shotgun sequence (5867 bp)
Overview 1 RT 1: 365-4093 bp Neighborhood of RT #1 [365, 4098] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 365-571 bp Feature: gene Location: 905-1114 bp Feature: gene Location: 1249-3150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1516-2347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 51 6-2347 bp Feature: domain Description: Intron_maturas2 Location: 2461-2719 bp Feature: domain Description: Intron_maturas2 Location: 2461 -271 9 bp Feature: domain Description: HNHc Note: nucleases Location: 2893-3055 bp Feature: domain Description: HNHc Note: nucleases Location: 2893-3055 bp Feature: gene Location: 3345-3797 bp Feature: domain Description: PRK13732 Location: 3351-3795 bp Feature: domain Description: PRK1 3732 Location: 3351 -3795 bp Feature: gene Location: 3865-4098 bp Feature: domain Description: DUF905 Location: 3895-4093 bp Feature: domain Description: DUF905 Location: 3895-4093 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional)

Seq: LJGG01000050.1 Escherichia coli strain IMT31359 contig_51, whole genome shotgun sequence (65430 bp)
Overview 1 RT 1: 39581-43464 bp Neighborhood of RT #1 [39581, 43469] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 39581-40039 bp Feature: domain Description: dut Location: 39587-40034 bp Feature: domain Description: dut Location: 39587-40034 bp Feature: gene Location: 40146-40742 bp Feature: domain Description: slmA Location: 40152-40728 bp Feature: domain Description: slmA Location: 40152 -4072 8 bp Feature: gene Location: 40788-41747 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 40923-41472 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4092 3-41472 bp Feature: gene Location: 42045-42701 bp Feature: domain Description: pyrE Location: 42063-42696 bp Feature: domain Description: pyrE Location: 42 063-42 696 bp Feature: gene Location: 42753-43469 bp Feature: domain Description: rph Location: 42756-43464 bp Feature: domain Description: rph Location: 42 756-43464 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)