myRT

myRT report for GCA_001282215.1_ASM128221v1

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Seq: LJGC01000024.1 Escherichia coli strain IMT28764 contig_24, whole genome shotgun sequence (47406 bp)
Overview 1 RT 1: 22089-25972 bp Neighborhood of RT #1 [22089, 25977] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 22089-22805 bp Feature: domain Description: rph Location: 22092-22800 bp Feature: domain Description: rph Location: 22092-22800 bp Feature: gene Location: 22857-23513 bp Feature: domain Description: pyrE Location: 22875-23508 bp Feature: domain Description: pyrE Location: 22875-23508 bp Feature: gene Location: 23811-24770 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23946-24495 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23946-24495 bp Feature: gene Location: 24816-25412 bp Feature: domain Description: slmA Location: 24822-25398 bp Feature: domain Description: slmA Location: 24822-25398 bp Feature: gene Location: 25519-25977 bp Feature: domain Description: dut Location: 25525-25972 bp Feature: domain Description: dut Location: 25525-25972 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: LJGC01000073.1 Escherichia coli strain IMT28764 contig_79, whole genome shotgun sequence (23218 bp)
Overview 1 RT 1: 16391-21999 bp Neighborhood of RT #1 [16391, 22538] SLATT_5 RVT-UG17 Caudo_TAP phage_tail_N Collar Feature: gene Location: 16391-16531 bp Feature: gene Location: 16544-17095 bp Feature: domain Description: SLATT_5 Location: 16550-17066 bp Feature: domain Description: SLATT_5 Location: 16550-17066 bp Feature: gene Location: 17073-18443 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 17301-17907 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 17301-17907 bp Feature: gene Location: 18556-19140 bp Feature: domain Description: Caudo_TAP Location: 18772-19129 bp Feature: domain Description: Caudo_TAP Location: 18772 -1912 9 bp Feature: gene Location: 19140-22538 bp Feature: domain Description: phage_tail_N Location: 19143-19542 bp Feature: domain Description: phage_tail_N Location: 19143-19542 bp Feature: domain Description: Collar Location: 21861-21999 bp Feature: domain Description: Collar Location: 2 1861-2 1999 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, Caudo_TAP (pfam02413), phage_tail_N (pfam08400), Collar (pfam07484)