myRT

myRT report for GCA_001282225.1_ASM128222v1

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Seq: LJGB01000061.1 Escherichia coli strain IMT28707 contig_67, whole genome shotgun sequence (23242 bp)
Overview 1 RT 1: 693-6904 bp Neighborhood of RT #1 [693, 6904] phage_tail_N Collar Caudo_TAP RVT-UG17 SLATT_5 Feature: gene Location: 693-4091 bp Feature: domain Description: phage_tail_N Location: 696-1095 bp Feature: domain Description: phage_tail_N Location: 696-1 095 bp Feature: domain Description: Collar Location: 3414-3552 bp Feature: domain Description: Collar Location: 341 4-3552 bp Feature: gene Location: 4091-4675 bp Feature: domain Description: Caudo_TAP Location: 4307-4664 bp Feature: domain Description: Caudo_TAP Location: 4307-4664 bp Feature: gene Location: 4788-6158 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 5016-5622 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 501 6-5622 bp Feature: gene Location: 6136-6687 bp Feature: domain Description: SLATT_5 Location: 6142-6658 bp Feature: domain Description: SLATT_5 Location: 61 42-6658 bp Feature: gene Location: 6725-6904 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT phage_tail_N (pfam08400), Collar (pfam07484), Caudo_TAP (pfam02413), RVT-UG17, SLATT_5 (pfam18160)

Seq: LJGB01000077.1 Escherichia coli strain IMT28707 contig_87, whole genome shotgun sequence (47431 bp)
Overview 1 RT 1: 21443-25326 bp Neighborhood of RT #1 [21443, 25331] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 21443-21901 bp Feature: domain Description: dut Location: 21449-21896 bp Feature: domain Description: dut Location: 2 1449-2 1896 bp Feature: gene Location: 22008-22604 bp Feature: domain Description: slmA Location: 22014-22590 bp Feature: domain Description: slmA Location: 2 2 014-2 2 590 bp Feature: gene Location: 22650-23609 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 22785-23334 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 2 785-2 3334 bp Feature: gene Location: 23907-24563 bp Feature: domain Description: pyrE Location: 23925-24558 bp Feature: domain Description: pyrE Location: 2 392 5-2 4558 bp Feature: gene Location: 24615-25331 bp Feature: domain Description: rph Location: 24618-25326 bp Feature: domain Description: rph Location: 2 4618-2 532 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)