myRT

myRT report for GCA_001282235.1_ASM128223v1

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Seq: LJGF01000015.1 Escherichia coli strain IMT31352 contig_15, whole genome shotgun sequence (13948 bp)
Overview 1 RT 1: 10446-13882 bp Neighborhood of RT #1 [10446, 13947] autotrans_barl PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 10446-11063 bp Feature: domain Description: autotrans_barl Location: 10569-11010 bp Feature: domain Description: autotrans_barl Location: 1 0569-1 1 01 0 bp Feature: gene Location: 11066-11512 bp Feature: domain Description: PHA02517 Location: 11069-11510 bp Feature: domain Description: PHA0251 7 Location: 1 1 069-1 1 51 0 bp Feature: gene Location: 11629-13152 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11902-12634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 902-1 2634 bp Feature: domain Description: GIIM Note: maturase Location: 12709-12907 bp Feature: domain Description: GIIM Note: maturase Location: 1 2709-1 2907 bp Feature: gene Location: 13106-13531 bp Feature: gene Location: 13744-13947 bp Feature: domain Description: PHA02517 Location: 13747-13882 bp Feature: domain Description: PHA0251 7 Location: 1 3747-1 3882 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT autotrans_barl (TIGR01414), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: LJGF01000067.1 Escherichia coli strain IMT31352 contig_71, whole genome shotgun sequence (47280 bp)
Overview 1 RT 1: 21953-25836 bp Neighborhood of RT #1 [21953, 25841] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 21953-22669 bp Feature: domain Description: rph Location: 21956-22664 bp Feature: domain Description: rph Location: 2 1956-2 2 664 bp Feature: gene Location: 22721-23377 bp Feature: domain Description: pyrE Location: 22739-23372 bp Feature: domain Description: pyrE Location: 2 2 739-2 3372 bp Feature: gene Location: 23675-24634 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23810-24359 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 3810-2 4359 bp Feature: gene Location: 24680-25276 bp Feature: domain Description: slmA Location: 24686-25262 bp Feature: domain Description: slmA Location: 2 4686-2 52 62 bp Feature: gene Location: 25383-25841 bp Feature: domain Description: dut Location: 25389-25836 bp Feature: domain Description: dut Location: 2 5389-2 5836 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)