myRT

myRT report for GCA_001282275.1_ASM128227v1

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Seq: LJGD01000027.1 Escherichia coli strain IMT30467 contig_27, whole genome shotgun sequence (75031 bp)
Overview 1 RT 1: 21885-25768 bp Neighborhood of RT #1 [21885, 25773] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 21885-22601 bp Feature: domain Description: rph Location: 21888-22596 bp Feature: domain Description: rph Location: 21 888-22596 bp Feature: gene Location: 22653-23309 bp Feature: domain Description: pyrE Location: 22671-23304 bp Feature: domain Description: pyrE Location: 22671 -23304 bp Feature: gene Location: 23607-24566 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23742-24291 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23742-24291 bp Feature: gene Location: 24612-25208 bp Feature: domain Description: slmA Location: 24618-25194 bp Feature: domain Description: slmA Location: 2461 8-251 94 bp Feature: gene Location: 25315-25773 bp Feature: domain Description: dut Location: 25321-25768 bp Feature: domain Description: dut Location: 25321 -25768 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: LJGD01000075.1 Escherichia coli strain IMT30467 contig_86, whole genome shotgun sequence (5327 bp)
Overview 1 RT 1: 423-3611 bp Neighborhood of RT #1 [423, 3616] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 423-632 bp Feature: gene Location: 767-2668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1034-1865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1034-1865 bp Feature: domain Description: Intron_maturas2 Location: 1979-2237 bp Feature: domain Description: Intron_maturas2 Location: 1979-2 2 37 bp Feature: domain Description: HNHc Note: nucleases Location: 2411-2573 bp Feature: domain Description: HNHc Note: nucleases Location: 2 411-2 573 bp Feature: gene Location: 2863-3315 bp Feature: domain Description: PRK13732 Location: 2869-3313 bp Feature: domain Description: PRK13732 Location: 2 869-3313 bp Feature: gene Location: 3383-3616 bp Feature: domain Description: DUF905 Location: 3413-3611 bp Feature: domain Description: DUF905 Location: 3413-3611 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)