myRT

myRT report for GCA_001282295.1_ASM128229v1

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Seq: LJGK01000076.1 Escherichia coli strain IMT33204 contig_79, whole genome shotgun sequence (36712 bp)
Overview 1 RT 1: 10869-14752 bp Neighborhood of RT #1 [10869, 14757] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 10869-11327 bp Feature: domain Description: dut Location: 10875-11322 bp Feature: domain Description: dut Location: 1 0875-1 1 322 bp Feature: gene Location: 11434-12030 bp Feature: domain Description: slmA Location: 11440-12016 bp Feature: domain Description: slmA Location: 1 1 440-1 201 6 bp Feature: gene Location: 12076-13035 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12211-12760 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 221 1 -1 2760 bp Feature: gene Location: 13333-13989 bp Feature: domain Description: pyrE Location: 13351-13984 bp Feature: domain Description: pyrE Location: 1 3351 -1 3984 bp Feature: gene Location: 14041-14757 bp Feature: domain Description: rph Location: 14044-14752 bp Feature: domain Description: rph Location: 1 4044-1 4752 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: LJGK01000078.1 Escherichia coli strain IMT33204 contig_81, whole genome shotgun sequence (11071 bp)
Overview 1 RT 1: 1-3206 bp Neighborhood of RT #1 [1, 3259] PHA02517 RVT-GII GIIM PHA02517 autotrans_barl Feature: gene Location: 1-189 bp Feature: domain Description: PHA02517 Location: 4-124 bp Feature: domain Description: PHA02 517 Location: 4-12 4 bp Feature: gene Location: 781-2304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1054-1786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1054-1786 bp Feature: domain Description: GIIM Note: maturase Location: 1861-2059 bp Feature: domain Description: GIIM Note: maturase Location: 1861-2 059 bp Feature: gene Location: 2481-2867 bp Feature: domain Description: PHA02517 Location: 2484-2865 bp Feature: domain Description: PHA02 517 Location: 2 484-2 865 bp Feature: gene Location: 2870-3259 bp Feature: domain Description: autotrans_barl Location: 2873-3206 bp Feature: domain Description: autotrans_barl Location: 2 873-32 06 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), autotrans_barl (TIGR01414), RVT-GII, GIIM (pfam08388)