myRT

myRT report for GCA_001282335.1_ASM128233v1

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Seq: LJGJ01000147.1 Escherichia coli strain IMT33181 contig_197, whole genome shotgun sequence (13912 bp)
Overview 1 RT 1: 10428-13846 bp Neighborhood of RT #1 [10428, 13911] autotrans_barl PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 10428-11045 bp Feature: domain Description: autotrans_barl Location: 10551-10992 bp Feature: domain Description: autotrans_barl Location: 1 0551 -1 0992 bp Feature: gene Location: 11048-11494 bp Feature: domain Description: PHA02517 Location: 11051-11492 bp Feature: domain Description: PHA0251 7 Location: 1 1 051 -1 1 492 bp Feature: gene Location: 11611-13134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11884-12616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 884-1 261 6 bp Feature: domain Description: GIIM Note: maturase Location: 12691-12889 bp Feature: domain Description: GIIM Note: maturase Location: 1 2691 -1 2889 bp Feature: gene Location: 13088-13513 bp Feature: gene Location: 13726-13911 bp Feature: domain Description: PHA02517 Location: 13732-13846 bp Feature: domain Description: PHA0251 7 Location: 1 3732-1 3846 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT autotrans_barl (TIGR01414), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: LJGJ01000068.1 Escherichia coli strain IMT33181 contig_75, whole genome shotgun sequence (47263 bp)
Overview 1 RT 1: 21954-25837 bp Neighborhood of RT #1 [21954, 25842] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 21954-22670 bp Feature: domain Description: rph Location: 21957-22665 bp Feature: domain Description: rph Location: 2 1957-2 2 665 bp Feature: gene Location: 22722-23378 bp Feature: domain Description: pyrE Location: 22740-23373 bp Feature: domain Description: pyrE Location: 2 2 740-2 3373 bp Feature: gene Location: 23676-24635 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23811-24360 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 3811-2 4360 bp Feature: gene Location: 24681-25277 bp Feature: domain Description: slmA Location: 24687-25263 bp Feature: domain Description: slmA Location: 2 4687-2 52 63 bp Feature: gene Location: 25384-25842 bp Feature: domain Description: dut Location: 25390-25837 bp Feature: domain Description: dut Location: 2 5390-2 5837 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)