myRT

myRT report for GCA_001282345.1_ASM128234v1

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Seq: LJGH01000103.1 Escherichia coli strain IMT31487 contig_133, whole genome shotgun sequence (5883 bp)
Overview 1 RT 1: 1778-5881 bp Neighborhood of RT #1 [1778, 5881] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 1778-2011 bp Feature: domain Description: DUF905 Location: 1808-2006 bp Feature: domain Description: DUF905 Location: 1 808-2006 bp Feature: gene Location: 2079-2531 bp Feature: domain Description: PRK13732 Location: 2085-2529 bp Feature: domain Description: PRK1 3732 Location: 2085-2529 bp Feature: gene Location: 2726-4627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2993-3824 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2993-3824 bp Feature: domain Description: Intron_maturas2 Location: 3938-4196 bp Feature: domain Description: Intron_maturas2 Location: 3938-41 96 bp Feature: domain Description: HNHc Note: nucleases Location: 4370-4532 bp Feature: domain Description: HNHc Note: nucleases Location: 4370-4532 bp Feature: gene Location: 5369-5572 bp Feature: gene Location: 5624-5881 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: LJGH01000043.1 Escherichia coli strain IMT31487 contig_43, whole genome shotgun sequence (39834 bp)
Overview 1 RT 1: 21970-25853 bp Neighborhood of RT #1 [21970, 25858] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 21970-22686 bp Feature: domain Description: rph Location: 21973-22681 bp Feature: domain Description: rph Location: 2 1973-2 2 681 bp Feature: gene Location: 22738-23394 bp Feature: domain Description: pyrE Location: 22756-23389 bp Feature: domain Description: pyrE Location: 2 2 756-2 3389 bp Feature: gene Location: 23692-24651 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23827-24376 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 382 7-2 4376 bp Feature: gene Location: 24697-25293 bp Feature: domain Description: slmA Location: 24703-25279 bp Feature: domain Description: slmA Location: 2 4703-2 52 79 bp Feature: gene Location: 25400-25858 bp Feature: domain Description: dut Location: 25406-25853 bp Feature: domain Description: dut Location: 2 5406-2 5853 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)